Panicum hallii (Hall's panicgrass): 112891202
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Entry
112891202 CDS
T07366
Name
(RefSeq) transcription initiation factor TFIID subunit 4b-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112891202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112891202
03036 Chromosome and associated proteins [BR:
phai03036
]
112891202
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112891202
Coactivators
SAGA/TFTC/STAGA complex
112891202
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
112891202
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
RST
SPMIP10-like
DUF8089
Motif
Other DBs
NCBI-GeneID:
112891202
NCBI-ProteinID:
XP_025813927
LinkDB
All DBs
Position
4:complement(50462330..50472357)
Genome browser
AA seq
775 aa
AA seq
DB search
MSQATDGQLQATEQEVSVHASQQAGQPHMNTKDQFSKSELVTEGSKGEQPVQAEQQNPQL
QQFQPESRLQQAETNSFQLAEKETGSFGQQSFSGSKVDVAQPSVVQQNAKQVVGPQAPSG
AQDTRKGPSIPFNMLIPILQAHLDRDKDMQLQTVWAKLRRNEVHKDDFLRVIRNIVGDQM
LKQAAHKVFLQMQAQAQRNNQANPSQHSLFSQASAQQMPSSGSAQLHDQKVRSPGPSNQG
QKNQVSSSPQAFAPQSGTQAQTSTQHLSHDNPNPDPDAKVPNAIPNQPSRMNSAVSLQTK
NKQHQPTQFQQASQQIYGASNPGAQGYPRSITGSLRPSNPVPETQPSMHAHGMPPTKVAP
PPTHPMMQHNAVAWQMHQNKELKTNTLPPNANAKQNYESAGKARTVGAGNSSAKGKQGPP
NSSTSNASGGAKSNKKSGGQKKSSEAAGTTQSSSKKQKTSGAFQEQSIDQLNDVTAVSGV
NIREEEEQLLSAPKEESLASQEARRIAQEEEEKLFLRKGPLLKKLAEIARKCNLKNVNVD
VEHCLSMCVEERLRRFISTLIRVSKQRIDTEKTGHRLVITSDVGRQILQMNQKAKEEWDK
KQAEEADKNKKQTEADGSGAAELEKEKEESRPKNVKPNKEEDDKMRTNAANVAARQAVGG
SDMLSKWQLMAEQARQKREGLDVAAASQPGKGQGPRSLSKFGKGLGENQEGSKRSHSAAF
GTGGMKRPGRTPFAGPQRTISVKDVICALEREPQMMKSRLIFRLHERLPGDSSAD
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagctacagatggtcagctgcaagcaacagagcaggaagtaagtgtccatgca
agtcaacaagcagggcaaccacatatgaacacaaaagatcagttctccaaatcagaacta
gtaactgaaggttcaaaaggtgaacaacctgtccaagcagagcaacagaatccacagcta
caacaatttcagccagaaagtcgactacaacaggctgaaacaaatagcttccagttagct
gagaaagaaacagggagttttggtcagcagagtttttcaggttccaaggtcgatgtagct
cagccctcagtagttcagcagaatgcaaagcaagttgttggcccgcaagcaccatctggt
gcccaggatacaaggaaagggccatcaataccatttaatatgttaattcctatcctacag
gcacatcttgacagagacaaagacatgcaacttcaaactgtatgggcaaaacttaggcgt
aatgaagtccacaaagatgatttcttaagagtgatcaggaatattgttggggatcaaatg
ctcaagcaggcagcccataaagtttttctacagatgcaagcccaggcacaaagaaataac
caggcaaatccaagtcagcattctttattctctcaagcgtcagcacagcagatgccttcc
agtggttcagcacagttacatgatcagaaagttcgttcacctggaccatccaaccagggt
cagaaaaatcaggtgtcatcttcacctcaggcttttgcaccacagtcaggcactcaagcg
caaactagcacacaacatctttctcatgataaccccaacccagatcctgatgcaaaggta
ccaaatgctataccgaatcaaccatctagaatgaactcagcagtttcattgcaaacaaag
aacaaacagcatcaacccactcaattccagcaggcctcacaacaaatatatggagcaagt
aatcctggtgcccagggttatcctcggtcaatcactggttctcttaggccatcaaatcca
gttccagaaacacagccttccatgcatgctcatggaatgcctcctacgaaagttgcccct
ccccctactcatccaatgatgcagcacaatgcagttgcatggcaaatgcatcaaaacaag
gagttgaaaaccaatactctccctccaaatgctaacgcaaagcaaaactatgaatctgct
ggcaaggcccgcactgttggtgcaggaaattcttcagctaaaggaaagcagggaccccca
aactcatctacatcgaatgctagtggaggtgcgaagagtaataagaaatcgggtgggcag
aagaaatcatcagaagcagcaggcactacgcagtcttcaagcaaaaagcagaagacatct
ggagccttccaggaacaaagcattgatcaacttaatgatgtcactgctgttagtggtgtt
aatattagggaggaggaggaacagctactctctgccccaaaggaagagagccttgcctca
caagaagcaagaagaattgcacaggaagaagaagaaaagcttttcctacggaagggccca
ctcctgaagaaactagcagaaatagctcggaaatgcaatctgaagaatgttaatgttgat
gttgaacattgtttatcaatgtgtgtggaggagcgattgcgaagattcataagtactctc
atacgagtctcaaaacagagaattgacactgaaaagaccgggcatcgactagttattact
tcagatgttggccgtcaaattttgcaaatgaaccagaaagctaaggaagagtgggataaa
aaacaagcagaagaagctgacaagaacaagaagcaaactgaggctgatggtagtggtgct
gcagagttggaaaaggaaaaagaggaaagtcgcccaaagaatgtgaagcccaacaaggaa
gaagatgataagatgagaacgaatgcggcgaacgttgctgctcggcaagcagttggagga
agtgatatgctctcgaagtggcagctgatggctgaacaagccaggcagaagcgagaaggc
cttgatgtggctgctgcttcgcagccaggtaaaggacaaggtcccaggtcattatccaaa
ttcggaaaaggtctcggcgaaaaccaggaaggttcaaagaggagccattctgcagcattt
gggactggaggcatgaaaagacctggcaggacgccatttgcaggaccgcaacggacgatc
tctgtgaaggatgtgatctgtgccctggagagggaacctcagatgatgaaatcacggctc
atcttccggctgcacgagcggttgcccggagattctagcgcagattag
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