Panicum hallii (Hall's panicgrass): 112891769
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Entry
112891769 CDS
T07366
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a isoform X1
KO
K10695
E3 ubiquitin-protein ligase RNF1/2 [EC:
2.3.2.27
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
112891769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
phai04121
]
112891769
03036 Chromosome and associated proteins [BR:
phai03036
]
112891769
Enzymes [BR:
phai01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112891769
Ubiquitin system [BR:
phai04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112891769
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
112891769
Noncanonical PRC1 (PRC1.1)
112891769
Noncanonical PRC1 (PRC1.3/1.5)
112891769
Noncanonical PRC1 (PRC1.6)
112891769
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
zf-RING_4
zf-RING_6
zf-UDP
zf-Nse
zf-rbx1
YoeB_toxin
TRAF3_RING
zf-RING_11
zf-C3HC4_5
zf-RING_10
ZNF512_C2HC
Motif
Other DBs
NCBI-GeneID:
112891769
NCBI-ProteinID:
XP_025814506
LinkDB
All DBs
Position
5:7538270..7546995
Genome browser
AA seq
481 aa
AA seq
DB search
MPAQKRRLPSPSSKPRDHVAAPGSDAATAAGGGAGEGRGGRPPLPSGGAAKRRLTEPKPQ
RGLEDDSDAEDGGGADGDSESSQSDGGGYDEFMLVKLAEIRKEVQCPICLGIIRKTRTVM
ECLHRFCRDCIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEEL
AFNEQEKTRNKKIQETIEETFRRQSEAIGKKRSTTKATDTAFARKYRRNMRTRGRGRTIT
PDIAPIGSDDEDREEESANEVTKEPSSADDHSPDLRQKKCRKRSASQPSPARTIGSSDHS
FEENDEVIGGKEILATSPLRGEMLAWGKNGTRSQNRHGSASSNVRMGRSGRIAKLVDHLR
TTDEMDKEFPLYLVLLPIDGQSIPNLEKPYLSCRPTLSIQHLVKFIAHQLSRKIEELEMY
IRMDRHNGSVGSKASSTVESKSHPFDDLERLSGDKLLSDLHPSFASSNGDLELLYALKTQ
D
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcgcagaagcgccggctcccgtcgccgtcctcgaaaccccgcgaccacgtcgcg
gctcccggctctgatgccgccaccgccgccggcgggggcgcaggggaaggaaggggagga
cgcccgccgctgccgagcgggggcgccgccaagcggaggttgaccgagccaaagccgcag
cgcggactcgaagacgattcggacgcggaggatggcggcggcgcggacggcgatagcgag
tcctcgcagagcgacggcggcggctacgacgagtttatgctagtgaaattagcagagata
cggaaggaggttcagtgccctatctgtttaggaattattcggaagacaaggacagttatg
gaatgtttgcaccgattctgtagagactgcattgataaatctatgcgactaggaaataat
gaatgcccagcgtgtcgcactcattgtgcaagcagacgttctttgagggatgatcctaat
tatgatgcactgattgcagccttatatccagatattgacaagtatgaggaagaggaactt
gctttcaatgaacaggagaagactcggaataaaaagattcaagaaaccattgaggaaaca
tttcgaagacagtccgaggcaattggtaagaagcgttccacaacaaaagcaactgacact
gcctttgcaaggaagtaccggagaaatatgcgaacacggggcagaggcagaaccataacc
cctgatattgcccctattggctctgatgatgaggatagagaagaagaaagtgccaatgag
gtcaccaaagagccatcttctgctgatgatcattctccagatttaagacagaaaaaatgt
aggaagaggtctgcatcacaaccttcacctgctagaaccattggcagtagtgaccacagc
tttgaggagaacgatgaagtaattggtggaaaagaaattttggccacctccccattgcgg
ggagagatgcttgcatggggaaaaaatggtacaaggagccagaatcgacatggcagtgct
agttcaaatgtcagaatggggaggagcggacgcattgcgaaattggttgatcacctccgt
actactgatgaaatggataaagagttccccttgtatcttgttctccttccaatcgatgga
caaagcatacctaacttggaaaagccctatctaagttgtcgaccaactttgtccattcaa
catcttgtaaagtttattgctcatcagttgtctcggaaaatcgaggaactggagatgtac
ataaggatggaccgccacaatggaagtgttggctcaaaggcttccagtacagttgagtca
aaatcacatccatttgatgacttggaaagactgagtggagataaacttctttcggacctt
cacccttcgtttgcctctagcaacggtgatctggaattgctgtatgctttgaaaactcaa
gactag
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