Panicum hallii (Hall's panicgrass): 112891880
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Entry
112891880 CDS
T07366
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03440
Homologous recombination
phai03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112891880
03460 Fanconi anemia pathway
112891880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
phai04121
]
112891880
03036 Chromosome and associated proteins [BR:
phai03036
]
112891880
03400 DNA repair and recombination proteins [BR:
phai03400
]
112891880
Ubiquitin system [BR:
phai04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
112891880
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
112891880
DNA repair and recombination proteins [BR:
phai03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
112891880
FA (Fanconi anemia) pathway
Downstream FA components
112891880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA2
BRCA-2_OB1
BRCA-2_helical
Motif
Other DBs
NCBI-GeneID:
112891880
NCBI-ProteinID:
XP_025814661
LinkDB
All DBs
Position
5:complement(55739364..55749859)
Genome browser
AA seq
1561 aa
AA seq
DB search
MPCKWQVWTQPDGSLVWVPATETPPTPPPPPAAAPAAAGPPDPAPPHPPPPDGVPIEEYL
GADGAKGGRLPLMADLILQALDTLTEDGTDALTEGVNTGGLFSTGSGRLVTVSERAIRRA
SALVGEEMEEAANGNRKRKQPFGDDAGLQGDRTNLDVPLGGGAHKDNLLPMFQTGSGKIV
PLCKDSFQKARAVLEENVENAAGARQPMFHTGTGRSVLVSKSSIDKARAVLEGQTVANEG
DAGDMEQFPMFQTGSGRAMSISMASVQKAKAVLDENNVNTGNVEGPGYPDQSLIFQTGSG
RPVLISERSIERSRAVLMDEGAENTGQRDTGYQLPIFQTGMGRPVAVKHGSIKKAKAVLE
DGDVKRSGNGDTDICATSFQFETPTSVLMSSSLIMNDRTVTPKENTSVQGKCYEGDGHLP
LFQTGLGRSVTVSKSSIKRASVILEPRNIAKELEDEAHLNDVCATSIIKTGLGRSVLSEN
SRENAQVVSEAVKRVNSDIGDGFAEAPMFQAGIQQFSPENGSSKHRATLLEQGKLATKGY
EDCGNSLPMFQTGSGKSVLVSESSVRKARAVLEEEGDVNRENCKLVKMDKKFPVFASPFK
TSCARTVNVSSAGVSRAATLLGLEEDTFSTQFFGHVGDKLGTKITVKLENPERMLDVASA
HAISGGSHKGFCPTEKPILIERHQQFGFSKTASDAVEHSIRFSTAGGRSMAISTDALQRA
KSLLNDSGSEVSPNDSVGCSLASAKEKQPDSTISPKGDESNLLHGTKVIGYAVPDIPVTK
GNANKFHMGRQYHSINEIPKVPKLPRYLSEGDNAIGTKDKTQRHHMPAGPLVDITNYMAT
CSGKNTDHFANGKRVIGGRNSISPFKRPRSSRFITPIKTNKVSSAGESKVASTQISPCRT
KLSARYPFQHQRKSCKEYFGGPPRFLQTEHVTDDVKLMDAKGAEKFKFQHMGTGAEDFQK
MLLTCGASLSYATKEWVSNHYKWIVWKLASLERCYPTRAAGKFLTVDNVFEELKYRYDRE
VNHGHRSAIKKILEGNASPSLMMVLCISAIYSCPAQSDNKLEVDKIDNNEDSNGNKSLSA
SNRNMSAKIELTDGWYSLEASLDMALSEQLEKRKLFLGQKLRIWGASLCGWSGPVSFHEA
SGIVKLMVHINGTYRARWNETLGFCKHAGLPLAFKCIKASGGRVPRTLVGVTRIYPVLFR
ERLPDGCSIVRSERMERKALQLYHQRVSKIAEDIMFEQQENCDSTDDNEEGAKICKMLER
TAEPEVIMAGMTSEQLMHFSSYKEKQKEVMQNEVAKKVQKALEVADLSSRDVTPFLKVRV
MGLVSRLSASTSSKKEGLITIWNPTEMQKADLVEGQIYSVTGLRPSNHCTEILYLHGRGS
STKWKPLASAQTTDFEPFFTPRKAIELSKFGEVPLSSEFDIAGVILYVGNMYLCNNQKRQ
WLFITDGSKFISEQKSEEQDCLLAVSFSSPTTGEDSALFSNTLSGNTVGFSNLVKRQKDQ
MRQIWVAEATESSTYTLSHEIPRKSHLKEAAASAERWASRSCHKIQELKEMVLCIVGDSG
G
NT seq
4686 nt
NT seq
+upstream
nt +downstream
nt
atgccgtgcaagtggcaggtctggacccagcccgacggcagcctcgtctgggtccccgcg
accgagacgcctcccaccccgcccccgccgcccgcggcggccccggcggcggcgggcccg
cctgatcccgctcctcctcatccgccgccgcccgacggcgtgccaatcgaagaataccta
ggcgcggacggcgccaaggggggtcgcttgcccttaatggccgacctaatcctccaagcg
ctggacacgttgactgaagatggaacggatgcactgactgagggtgtcaatacgggtgga
ttgttctccactgggtcggggaggttggtgaccgtcagcgagagggccataaggagagct
agtgcgttggtcggtgaggagatggaggaggctgctaacggtaacaggaagagaaagcaa
ccatttggtgatgatgctggtctacagggtgaccggacaaacttagatgttccattggga
ggtggtgcacataaagataacttgttgccaatgttccaaactggatcaggcaaaatagtc
ccgctctgcaaggactcatttcagaaggcaagagctgttttagaagaaaatgttgagaat
gctgctggtgccagacaaccaatgttccatactggtacgggtagatcggtcctagtcagc
aagagctccattgataaggcgagagctgttttagagggtcaaacagtcgcaaatgaagga
gatgcaggagacatggaacagtttccaatgtttcaaactggttcaggtagagctatgtca
atcagtatggcatctgtacagaaagctaaggctgtgctagatgaaaataatgtaaataca
gggaatgttgagggtcctggttaccccgaccagtctctgatatttcaaactggttccgga
agaccagtcttgatcagcgaaagatccattgagagatctagggctgtgttgatggatgaa
ggtgctgaaaatactggacaacgggatactggctaccagctcccaatttttcaaacagga
atgggaaggcctgttgctgtgaaacatggctctattaaaaaggcaaaggcagttttggag
gatggagatgttaaaagaagtggaaatggagatacggatatttgtgctacatctttccaa
tttgaaaccccgacgtctgttttgatgagtagcagtttaattatgaacgatagaactgtt
acaccaaaggaaaatacttcagtgcaaggaaaatgttatgagggtgatgggcacttgccg
ttgttccagactgggttagggaggtcagttacagtaagtaagagctcaattaaaagggca
agtgtaattctggagccaaggaacattgcaaaggaattggaagatgaagctcatctaaat
gatgtttgtgccacctcaataatcaaaactggacttggaaggtccgtcttaagcgaaaac
tcaagggaaaatgcacaagttgtctcagaggctgtaaaaagagtaaatagtgacattggg
gatggctttgctgaagccccaatgttccaggctggaatacaacagttttcacctgagaat
ggaagttcaaaacatagggccaccctcttggagcaaggcaaattggcaacaaaaggatat
gaagactgtggaaattcattgccaatgtttcaaactggatccggaaaatcggtcttggtc
agtgaaagctcagtacggaaggcaagggctgttttggaggaagaaggtgatgtaaaccga
gagaactgcaagttggttaaaatggacaaaaagtttccagtcttcgcttcacctttcaag
acaagctgtgcaagaacagtaaatgtatcttcagctggtgtttctcgagctgctacctta
ttgggcttggaggaggataccttttcaactcaattttttggacatgtgggtgataagtta
ggtacaaagataactgttaagctggaaaatccagaacgaatgcttgatgttgcatcggca
catgcaatttctggtggctctcataagggtttttgtccaacagaaaaacccatacttata
gaaagacatcagcagttcggattttctaaaactgcctctgatgctgttgagcattctatc
aggttcagcactgctggtggccgatcaatggctatttctactgatgcactacaacgtgca
aaaagccttttgaacgattcaggttcagaggtttcaccaaatgattcagtaggctgctct
ctggcatcagctaaagagaagcaaccagattcaactatttctccaaaaggagatgaatct
aacttattgcacgggactaaagtaatcggatatgctgtacctgatatccctgtaactaaa
ggaaatgctaataagtttcatatggggaggcaatatcactcaatcaacgaaattccaaag
gtcccgaagcttcccagatatttatccgaaggtgacaatgcaattggcaccaaagacaag
acccagaggcatcatatgccagctggacctttggttgacatcactaactacatggctact
tgttctggaaaaaatacggaccactttgctaatggaaagagggtaatcggaggaagaaac
tccatatctccattcaaacggccccgttcttccaggttcatcacaccaataaaaaccaac
aaagtttcctctgctggagaatccaaagtagcgtcaactcagatcagcccctgtaggaca
aagctgtctgctcgttatcctttccaacatcaaaggaaaagctgcaaagaatattttggt
ggtcctcctcgcttcctacagactgaacatgtaactgatgacgtgaagctcatggatgca
aaaggagctgagaagtttaaatttcagcatatgggtactggagcagaagattttcagaag
atgctgctcacatgtggtgcttcattatcatacgcaactaaagaatgggtcagtaatcac
tataaatggattgtgtggaaacttgcttcactggagagatgctacccaactagagctgct
ggtaaattcttgacggttgacaatgtttttgaggagcttaagtaccggtatgatagggaa
gtgaaccatggccaccggtcagcaataaaaaagattttagaagggaatgcctcaccctct
ttaatgatggtcctgtgcatttcagctatttactcttgtcctgcccaaagtgacaataag
ttggaggttgacaagatagataataatgaagacagcaatggcaataaaagcttgtcagcc
tctaatagaaacatgtctgcaaaaattgaattaactgatggatggtattcacttgaggca
tcattagatatggcactttcagaacaactagaaaaaagaaagcttttcttaggacagaag
cttcggatatggggagcttctttatgtggttggtctgggcctgtgtcatttcatgaggca
tctggtattgtcaaattaatggtccacataaatggcacctatcgtgcaagatggaatgag
accttgggattctgcaagcatgctggactcccactggcattcaagtgcataaaagcttcc
ggtggtagagttcctaggacactagttggagtcacaaggatatatcctgttctcttccgg
gaaaggttgcctgatggttgttctattgtgagatctgaaaggatggaaagaaaggcgctg
caactgtaccaccagagagtatctaagattgcagaagatattatgtttgaacaacaagaa
aactgtgacagtacagatgataatgaggaaggggctaaaatttgcaaaatgctagagcgt
acagctgagcctgaagttataatggcaggcatgacctcagagcagttgatgcacttctca
tcttataaagaaaaacagaaggaggttatgcaaaatgaagtagctaagaaggttcaaaag
gcccttgaagttgctgaccttagttcaagagatgttacaccatttttgaaagtgagggtg
atggggcttgtcagtagactttctgcttcaacatccagtaaaaaggaagggctaataaca
atttggaaccctactgagatgcagaaagctgatcttgtggagggacaaatttattcagtt
acaggattgaggccttcgaatcattgtactgaaatcctctacttgcatggtagaggatca
tctacaaagtggaagcccttagcatcagctcagactacagattttgaaccattcttcacc
cctcgtaaagcaattgaactgtcaaagtttggtgaggtgccgctttcaagtgaatttgac
attgcaggtgttattttatatgttggcaatatgtatttatgtaacaaccagaaaaggcag
tggctctttataacagatggatctaaatttatctctgaacaaaagtccgaagagcaagat
tgtcttctagcagttagtttttcttccccaaccactggcgaagactctgcattgtttagt
aataccctctctggaaacacagttggttttagtaatctggtcaagcgacagaaagaccag
atgaggcaaatatgggtagctgaggcaacagagagctctacctacactctttctcatgag
attcctagaaaatctcacctaaaagaagctgcagcttctgctgaaagatgggcttcaaga
tcttgtcataaaattcaagagctaaaagaaatggttttatgtatagttggtgacagtggt
ggctga
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integrated database retrieval system
