Panicum hallii (Hall's panicgrass): 112891993
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Entry
112891993 CDS
T07366
Name
(RefSeq) DNA excision repair protein CSB
KO
K10841
DNA excision repair protein ERCC-6
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
112891993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
phai03036
]
112891993
03400 DNA repair and recombination proteins [BR:
phai03400
]
112891993
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
112891993
DNA repair and recombination proteins [BR:
phai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
112891993
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
AAA_34
Motif
Other DBs
NCBI-GeneID:
112891993
NCBI-ProteinID:
XP_025814813
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All DBs
Position
5:52825780..52831160
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AA seq
1210 aa
AA seq
DB search
MDEEDDDQRLLHSLGVTSANIEDIEKKILSQAQADPKHDVEEVAAANDHERGDDAVPEAD
VQARLHQKLHSVQLEIDAVASTIKRAKHASGKQVDSSDSGDTQDKKKQKRAEHTSQDDPH
GGALQQALAAERLKSLKKAKAQIQKEITQLEPCPSGSDKRKDKMLAMPVEEEPRRKKKTL
MPSRGPKKMSAPKLKTMSYNDDDDFDSVLDGASAGFMETEREELIRKGLLTPFHKLKGFE
KRVELPGPSHRQNDPSDQVGETMEASRIAKFAQSMQQIAQSRPMTKLLDPESLPKLDAPT
APFQRLGRPLKRPVSPSSEEQEKKRRRNKTKRPLPNKKWRKANLLKESLLETDDEDDGVI
AASVSEDEDQAAEGFDGLPPVILEGGLRIPGTIYEQLFDYQKVGVQWLWELHCQRAGGII
GDEMGLGKTVQVLTFLGSLHNSGMYKPSIVICPVTLLQQWQREASRWYPKFKVKILHDSV
NGSSKKSKPYNDSDSEASWDSDSEEVKRAKPAKKWDDLISSVVNSGSGLLLTTYEQLRIL
GEKLLDIEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDF
VFPGKLGVLPVFETEFSVPITVGGYANATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVN
AQLPKKTEHVLFCSLTPEQRATYRAFLASSEVEQIFDGNRNSLYGIDVLRKICNHPDLLE
REHAAQNPDYGNPERSGKMKVVEQVLKVWKDQGHRVLLFTQTQQMLDILESFLTACDYQY
RRMDGLTPAKQRMALIDEFNNTDEIFVFILTTKVGGLGTNLTGANRIIIYDPDWNPSTDM
QARERAWRIGQTRDVTAYRLITRGTIEEKVYHRQIYKHFLTNKVLKNPQQRRFFKARDMK
DLFTLQDDEGNGLTETSNIFSQLSKDVNIRVPNEGQQDQVHIASTLPSTSESEPSNGGNG
KVDENSDQADEESNILKSLFDAQGIHSAINHDAIMNANDDQKVRLEAEASQVAQRAAEAL
RQSRMLRSRDSFAVPTWTGRSGAAGAPSSVRRKFGSTVNSQLISSSQPSETSSSRSQSLP
VGALNGKALSSAELLAKIRGTREGAASDALEHQLNRGSGSDHIPGPSGNGVRSSNSSNRS
MIVQPEVLIRQLCTFIQQNGGSASSTSITEHFKSRIQSKDMLLFKNLLKEIATLQRGADG
ATWVLKPDYE
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggaggatgacgaccagcgcctgctgcacagcctcggcgtcacgtccgcgaac
atcgaggacatcgagaagaaaatcctctcgcaggctcaggctgacccaaagcatgatgtg
gaagaagtagcagctgccaatgaccacgagaggggtgatgatgccgtgcctgaggctgac
gtgcaggccaggctgcaccagaagctgcactccgtgcagctcgagatcgacgctgtagcc
tccaccatcaagagagctaagcacgcctccgggaagcaggttgacagctcagacagtggt
gacacgcaagataaaaagaagcagaagcgtgccgaacacacctcgcaggacgatcctcat
ggaggagccctccagcaggcgcttgccgccgagcgccttaagagccttaagaaagctaaa
gcgcagattcagaaagagataacgcagttggaaccctgcccgtcgggctcggacaaacgg
aaagataagatgctggccatgccggttgaagaggagccgaggcgtaagaagaagacacta
atgccatctcgagggcccaagaagatgtcggcaccaaaactgaaaaccatgagctacaat
gacgacgacgacttcgattctgtgcttgatggggcatctgcaggatttatggaaactgaa
agggaagaattgatcagaaagggcttgctgacaccctttcacaagttgaagggctttgag
aagcgtgttgaattacctgggccttctcataggcaaaatgatccctctgatcaagtcgga
gaaaccatggaagcttccaggattgctaagtttgctcagtcgatgcagcagattgcacaa
agccgcccaatgacaaaattgcttgatccagaatctttacctaaactggatgcacctact
gctccatttcaaaggctaggaagacctctaaaacgccctgtttctcccagttccgaggag
caggaaaagaagagacgaaggaataagaccaagaggcccttgcctaacaagaaatggagg
aaagccaacttattgaaggaatcacttttggaaactgacgatgaggatgatggggtcatt
gcggcatcagtatctgaggatgaagatcaagcagcagaaggttttgatggtttacctcct
gttatccttgaaggtggtttgagaattcctggcacaatttatgagcagctatttgactac
caaaaagtgggagtgcagtggctatgggaattacattgtcaaagggctggtggaattatt
ggagatgaaatgggcctaggaaagactgtgcaagtcttaacatttcttggttccttgcat
aacagtggcatgtacaagcccagcattgtcatttgtcctgtaacccttctgcaacagtgg
caaagggaggccagtcggtggtatccgaagtttaaagtgaagatcttgcacgattctgta
aatggttcaagtaaaaagagcaagccatataatgattctgacagtgaagcctcctgggat
agtgatagtgaagaggttaaacgcgcaaagcctgcaaaaaagtgggatgacttgatttca
agcgttgttaattcaggatcaggtttgcttttgactacatatgagcagctaagaatctta
ggggagaagttgcttgatatagaatggggatatgctgtgttggatgagggtcaccgtata
aggaacccaaatgctgagataacactggtgtgcaagcaactgcagactgtgcacaggata
atcatgacaggtgcacctattcaaaataaactttctgaactctggtccctttttgatttc
gtgttccctggaaaactgggtgtgctgcctgtatttgagactgagttttctgtgccaatt
actgttggtggttatgctaatgcaacgccattgcaagtgtccacagcttacagatgtgct
gttgtcttgcgtgatcttatcatgccataccttcttaggcgcatgaaagctgatgtcaac
gcacagctccccaagaaaacagagcatgttcttttctgtagtctgactccagagcagcgt
gctacttatcgtgctttccttgctagttcagaggtggaacaaatatttgatggcaataga
aattcactgtatgggatagatgtcctaaggaagatatgcaatcatcccgatctacttgag
agagaacatgctgctcagaatcctgactatgggaatcctgaaagaagtggaaagatgaaa
gtggttgagcaagttcttaaagtctggaaggaccaaggccaccgtgttcttcttttcact
cagactcaacaaatgttagacattttggagagcttcttgacagcatgtgactaccaatac
cgaagaatggatggactaacacctgcaaaacaaagaatggcactaattgatgagttcaat
aacacagatgaaatttttgttttcattctgaccacgaaagttggtggcctgggtacaaat
ttgactggtgcaaacaggattattatttatgatcccgactggaacccttcaacagacatg
caggccagggaacgtgcatggcgtattgggcaaactagagatgtgacagcttacagactg
atcacacgtgggacaatagaggagaaagtctatcatcgacagatatacaagcatttcctt
actaacaaagtattgaaaaacccacagcagaggagattctttaaagccagagacatgaag
gatttattcacactacaagatgatgaaggaaatggtttgacagaaacatcaaatattttc
agccaattgtctaaagatgtgaatattagggttccgaatgaaggtcaacaagaccaggta
catattgcttcgactctgccaagcaccagtgagtctgaaccatctaatggagggaatggg
aaagtggatgagaactctgaccaagcagatgaagaatcaaacattttgaagagtcttttt
gatgcccagggcattcatagcgcgatcaatcatgatgccataatgaatgctaatgatgac
cagaaggtgcgccttgaagcagaagcctcacaggtggcacaaagggcagctgaagcttta
cgtcaatctcggatgctcagaagccgtgacagctttgctgttcccacgtggactggaaga
tctggtgctgctggggcaccctcttctgttcgcaggaagtttgggtccacagtcaacagc
cagttgatcagttcgtcacagccatcagaaacttcaagcagcaggagccaaagtcttcca
gtaggtgctctaaatggcaaggcactgtcttctgccgaacttttggctaagatccgtgga
acccgagagggggctgcttcagatgcattggaacatcaactcaacagaggatcaggttcc
gatcacataccaggtccatcagggaatggcgtccgctcatctaactcttctaacagaagc
atgatcgtgcaacctgaagtcctgatccgtcagttgtgcaccttcatacagcagaatggt
gggtctgccagctccacgagcataactgaacacttcaagagccgcatacagtcaaaggat
atgcttctcttcaagaacctgcttaaggagatagcaacattgcaaaggggcgcagatggt
gccacgtgggtgctgaaacctgattacgagtga
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integrated database retrieval system