Panicum hallii (Hall's panicgrass): 112892008
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Entry
112892008 CDS
T07366
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 30
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112892008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phai03041
]
112892008
03009 Ribosome biogenesis [BR:
phai03009
]
112892008
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112892008
Spliceosome [BR:
phai03041
]
Complex A
U1 snRNP components
U1 related factors
112892008
Complex B
112892008
Ribosome biogenesis [BR:
phai03009
]
Eukaryotic type
Pre-60S particles
Helicases
112892008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
112892008
NCBI-ProteinID:
XP_025814839
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All DBs
Position
5:3021695..3025727
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AA seq
570 aa
AA seq
DB search
MNPYDLRFADPSSYHDRRSDLAVAPMVAPPVPMPAANTYAAAYPPVPAASAGGDYPRYGQ
GGRGRGGGGRGGGGGYGGGGGGGYGGGRGGRGRDGLDTLALPKPDFRSLIPFEKNFYVES
PSVQAMSDAEVAQYRRLRDITVEGRDVPKPVRYFQEANFPDYCMQAIAKSGFVEPTPIQS
QGWPMALKGRDLIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDGPIVLILAPTRELAVQ
IQEESTKFGSYSRTRSTCVYGGAPKGPQIRDLRRGVEIVIATPGRLIDLLEAGHTNLRRV
TYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWPREVEALARQFLQNPYKVTI
GSPDLKANHSIQQIVEVISDHEKYPRLSKLLSDLMDGSRILIFFQTKKDCDKITRQLRMD
GWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDVAARGLDVKDIKCVINYDFPTTLED
YIHRIGRTGRAGASGTAFTFFTHANAKFSRNLVKILREAGQVVNPALESMSKSASSMGGG
NFRSRGRGGFGNRGHISGSNTFPLGGRRAY
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgaacccctacgacctccgcttcgccgacccctcgtcgtaccacgacaggcgcagcgac
ctggccgtggctcctatggtcgctccgccggtccccatgccggcggcgaacacttacgcc
gcggcgtatccgcccgtgccggcggcctccgctggcggcgattacccgcgctacgggcag
ggcggcagaggccgtggtggaggcggcagaggcggtggaggcggctatggaggtggcggt
ggaggcggctatggtggcggcagaggagggcgcggcagggacgggcttgacacgctcgcc
ctgccaaagcctgacttccggagcctgataccgtttgagaagaacttctacgtggagtct
ccctccgtgcaggctatgtcggatgcggaggtggcgcagtaccgccgcctacgggatatc
accgtcgagggccgggatgtgcccaagcctgtccgatacttccaggaagccaacttccca
gattactgcatgcaagcaattgccaagtctgggtttgtggagcccacacctattcaatct
caaggttggcctatggctctgaagggtagggacctgattggtatcgctcaaacaggctca
gggaaaacattatcttatctgctacctggtttggttcatgttggcgcccagcctcggcta
gagcaaggtgatggcccgattgtattaatcctcgccccaacaagagaacttgctgttcaa
atacaggaagaatccacaaaatttggatcatattcaagaactagaagcacatgtgtatat
ggtggtgcacctaagggtccacaaatacgtgaccttagaagaggagtggaaattgtcatt
gcaactcctgggcggttgattgatttgctggaagctggtcacacaaacctacgtagagtg
acataccttgtgctggatgaggcagaccggatgttagatatgggttttgagcctcaaatt
cgaaaaattgttgcacagatccggccagacaggcaaaccctgtattggagtgccacgtgg
cctagagaagttgaagccttagctagacagtttctgcaaaatccttacaaggtaaccata
ggatcacctgaccttaaagctaatcattccatacaacaaattgttgaagttatttcagat
catgagaagtacccgagactcagtaagctcttgtctgatttaatggatgggagccgtatc
ttgatatttttccaaacgaaaaaggactgtgataagatcaccaggcaacttagaatggat
gggtggccagcattatctatacatggtgataaagctcaagctgaaagggactatgttctt
gcagagtttaagagcggcaagagtcccataatggctgccacagatgtagcagcacgtggt
cttgatgtgaaggacataaaatgtgtgataaattatgattttccaacaactcttgaagat
tatattcacaggataggtcgaactggccgtgctggtgccagtggaactgcatttactttt
ttcacacatgcaaatgcgaagttctcaaggaatctagtcaagattttgcgggaagctggc
caagtcgtgaatcctgcactagaatccatgtccaaatctgcaagttcgatgggaggaggc
aatttccggtcgaggggcagaggtgggtttggtaaccggggtcatatctctggatcaaat
acctttccgttaggaggaagaagggcatactaa
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