KEGG   Panicum hallii (Hall's panicgrass): 112892516
Entry
112892516         CDS       T07366                                 
Name
(RefSeq) histone deacetylase 2-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
phai  Panicum hallii (Hall's panicgrass)
Pathway
phai03082  ATP-dependent chromatin remodeling
phai03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:phai00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    112892516
   03083 Polycomb repressive complex
    112892516
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:phai03036]
    112892516
Enzymes [BR:phai01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     112892516
Chromosome and associated proteins [BR:phai03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     112892516
   HDAC complexes
    Sin3A-HDAC complex
     112892516
    BRAF-HDAC complex
     112892516
    REST complex
     112892516
    SHIP complex
     112892516
    MiDAC complex
     112892516
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     112892516
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    112892516
  Chromatin remodeling factors
   NuRD complex
    112892516
SSDB
Motif
Pfam: Hist_deacetyl OpuAC
Other DBs
NCBI-GeneID: 112892516
NCBI-ProteinID: XP_025815443
LinkDB
Position
5:17194085..17195735
AA seq 496 aa
MDTGGNSLPSQSCPDGAKRRVCYYYDRHIAGVDYGEDHVMVPRRVDMAHALIRSYGLLGD
MARLRSSPATDAEISGFHDGRYVGLLRDLTPEGFGAGGEVASRARCFNVGVVSTDGRSVD
NPPVAGLWDYCQRYAGGSLAAARALASGEADVAVNWSGGMHHACRDRASGFCYVNDIVLA
IDELLGHFRRVLYVDIDVHHGDGVETAFVGSNRVMTVSFHQRTEGFFPERRGLLEHVGEG
DGRHRAVNVPMKKGMDDDGYRRLFEPIMSKVMEVFQPEAIVMQCGGDSLSGDRLGHLNLS
IDGHARCVSFMRSFNTPLLLLGGGGYTINHVAACWCYETAVAIGKEIANDMPAHCYDGYY
RSQGYKLRYPVDKNLKNDNTDTYVTRTKCAVLRNLSELEAAPSVEFKEPAGGSIDAEALF
YRPAPREDDDPMERLHRRCGEMEERGFLMELGKRQLDLAKDDRESGGHHHAHRPEPVKKH
RSGKLHMEYHAHDHEF
NT seq 1491 nt   +upstreamnt  +downstreamnt
atggacaccggcggcaactcgctgccgtcgcagtcgtgccccgacggcgcgaagcggcgc
gtgtgctactactacgaccgccacatcgccggcgtcgactacggcgaggaccacgtcatg
gtgccccgccgcgtcgacatggcgcacgcgctcatccgctcctacggcctgctcggcgac
atggcccgcctccgctccagccccgccaccgacgccgagatctccggcttccacgacggc
cgctacgtcgggctcctgcgggacctcaccccggagggcttcggcgccggcggcgaggtc
gcgagcagggccaggtgcttcaacgtcggcgtggtctccacggacggccgctccgtcgac
aacccccccgtcgccggcctctgggactactgccagcgctacgccggcgggtcgctggcc
gcggcgcgcgcgctcgccagcggggaggccgacgtcgccgtcaactggtccggcggcatg
caccacgcgtgccgggacagggccagcggcttctgctacgtcaacgacatcgtgctcgcc
atcgacgagctcctcggccacttccggcgcgtgctgtacgtggacatcgacgtgcaccac
ggcgacggcgtcgagaccgccttcgtcgggtccaaccgggtgatgaccgtgtcgttccac
cagcgcaccgagggcttcttcccggagcggagggggctcctcgagcacgtcggcgaaggg
gacggccggcaccgcgccgtgaacgtgccgatgaagaagggcatggacgacgacgggtac
cgccggctgttcgagcccatcatgagcaaggtcatggaggtgttccagccggaggccatc
gtgatgcagtgcggcggcgactcgctctccggcgacaggctcggccacctgaacctgtcc
atcgatggccacgcccggtgcgtcagcttcatgcggagcttcaacacgccgctgctcctc
ctcggcggcggcgggtacaccatcaaccacgtcgccgcctgctggtgctacgagacggcg
gtcgccatcggcaaggagatcgccaacgacatgccggcgcactgctacgacggctactac
cggagccagggctacaagctccgttacccagtcgataagaatctcaagaacgacaacacg
gacacctacgtgacgcgcacgaagtgcgcggtcctgcggaacctcagcgagctcgaggcc
gcgccgagcgtcgagttcaaggagccggccggcgggagcatcgacgccgaggcgctcttc
tacaggccggccccgcgggaggacgatgaccccatggagaggctgcaccggcggtgcggc
gagatggaggagcgcggcttcctcatggagctggggaagcggcagctcgacctggccaag
gacgacagagaaagtggcggccaccaccatgcgcatcggccggagccggtgaagaagcac
cggtccggaaagcttcacatggaataccatgcgcatgaccatgaattctaa

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