KEGG   Panicum hallii (Hall's panicgrass): 112892939
Entry
112892939         CDS       T07366                                 
Name
(RefSeq) WD repeat-containing protein ATCSA-1-like
  KO
K10570  DNA excision repair protein ERCC-8
Organism
phai  Panicum hallii (Hall's panicgrass)
Pathway
phai03420  Nucleotide excision repair
phai04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:phai00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    112892939
  09124 Replication and repair
   03420 Nucleotide excision repair
    112892939
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:phai04121]
    112892939
   03400 DNA repair and recombination proteins [BR:phai03400]
    112892939
Ubiquitin system [BR:phai04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     112892939
DNA repair and recombination proteins [BR:phai03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      112892939
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd EIF3I Beta-prop_EML_2 WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_EML ANAPC4_WD40 WD40_RFWD3 NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_DCAF4 Beta-prop_Nup120_160 Beta-prop_DCAF12 Beta-prop_Vps41 Beta-prop_WDR75_2nd WDR54 Beta-prop_RIG_1st
Other DBs
NCBI-GeneID: 112892939
NCBI-ProteinID: XP_025815835
LinkDB
Position
5:complement(5120434..5123457)
AA seq 452 aa
MWLEEVRGRERGELRARRFEAAARARRAASLALSNRKEFATPHHGAVNSLQVDLTEGRYL
LSGASDGSAAVFDVWNATEYETGFIAKHRHILLVDKQHQNGHKFAISAAVWYPVDTGLFV
TASFDQYVKVWDTNSTQVVMDFKMPGKVFTAAMSPIATTHMLIATGSADVQVRLCDIASG
AFTHTLSGHRDGIMSLEWSASSEWVLMSGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRS
PLLKSTTENDHIDSIGPSASTRSLAQKRTGNSKKNSPTMRKGQNLIHGHMQQRLHPGLSS
SQNRATSHYGAVTGLRTTKDGMYLLSSGSDSRLRLWDIDSGCNTLVNFEAMRLQTGKPLQ
LAVTEDPSLVFVPCMASIKAYNLWSGTTFRTFRGHYELVNCCYYSEQDQELYTGSNDRQI
LVWSPSTPAFTEMEDDEKRHGLSAADEDNWSD
NT seq 1359 nt   +upstreamnt  +downstreamnt
atgtggctggaggaggtgagggggagggagcgcggggagctgcgcgcccggaggttcgag
gccgccgcccgggcgcgccgcgcggcctcgctcgcgctctccaaccgcaaggagttcgcc
accccgcaccacggcgccgtcaactcgctccaggttgatttgacagaggggaggtacctg
ctctccggggcatcggatgggtcggccgctgtattcgatgtgtggaacgcgaccgagtac
gaaaccggcttcatagctaagcacaggcacatactgcttgtggacaagcagcaccagaat
ggccacaagttcgccatctcggcggcagtttggtatcctgtggataccgggctgttcgtc
acagcatcctttgatcagtacgtcaaagtttgggataccaattcgactcaagtcgtcatg
gattttaagatgcctgggaaagtgttcactgcagccatgtctccaattgcaacaacgcac
atgcttatcgctactgggagcgcagatgttcaggtccgtctgtgtgacatagcttctgga
gcctttacccacacattgtccggtcatcgtgatggcatcatgtctttggagtggtctgcc
tcaagtgagtgggttttgatgagtggtggctgcgacggggcaatacgtttctgggacatc
aggagagctggatgctttcgtgttcttgatcaatcacagtctcagcttggaaggaggtct
cctcttcttaaaagcacaacagagaatgatcacattgattccataggaccttcagcttcc
acaaggagcttagctcagaaaaggactggaaactctaagaagaactcaccaacaatgcgc
aaaggtcaaaatctgatacatggacatatgcaacagagattgcatcctggtttatcatcc
agtcaaaaccgtgcaacatctcattatggtgctgttactggattacgaacaactaaagat
gggatgtaccttctcagctcaggatctgattctcgtttaagactatgggacatcgattca
ggatgcaacactttggtcaattttgaagctatgcgattgcagactggcaagccattgcaa
ttagcagtcaccgaggatccatcacttgtatttgtgccatgcatggcaagcatcaaggca
tacaatttatggtctggtacgacatttcggacattccggggtcactacgaacttgtgaat
tgctgctactatagtgaacaggaccaagaactttatactggcagcaatgatagacaaatt
cttgtatggtctccatcaactccagcttttactgaaatggaagatgatgagaagcggcat
gggctttctgcagctgatgaggataactggagcgactga

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