Panicum hallii (Hall's panicgrass): 112892948
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Entry
112892948 CDS
T07366
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112892948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112892948
03012 Translation factors [BR:
phai03012
]
112892948
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112892948
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112892948
Translation factors [BR:
phai03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
112892948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
T2SSE
AAA_19
AAA_16
PhoH
ATPase
AAA_30
Motif
Other DBs
NCBI-GeneID:
112892948
NCBI-ProteinID:
XP_025815846
LinkDB
All DBs
Position
5:53665149..53676693
Genome browser
AA seq
1241 aa
AA seq
DB search
MLLTSVLRGRVRHLRRPRPLTMPTPLFLSRNPNPSPSATNPHLPSDPRSAAMSTSGVYVP
PMRRLRSVIASTNGSLAPPPSAAAQAQQAARTPEWPMDERSLSPPSPPQPRQRDIPPLPR
PPQPEHFRQQSAGYARYAYDDFSEDDSDREMDRTSVSSKGGSTLDNVDEWKWKLHMLLRN
DDEQEIISRERKDRRDFEQLAQLADRMGLHSRQYSRVVVFSKVPLPNYRSDLDDKRPQRE
VSIPSGLQREVDALLADYLARKRTNSGNFPSAAFSRSSSTDSFATDEGFFDQQDNQTSTS
AVMERIQRRKSLQLRNQQAAWQESNDGQSMIEFRRSLPAYKEKQTLLEAISQNQVVVVSG
ETGCGKTTQLPQYILESEIDAARGATCSIICTQPRRISAIAVSERVAAERGEKIGESVGY
KVRLEGMRGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDL
LPRRPELRLILMSATLNAELFSSYFGGAPMIHIPGFTYPVRNHFLEDILEFTGHRLTPYN
QIDDYGQEKSWKMQKQALRKRKSQIASAVEDAVEAADLRNYSPRTRDSLSCWNPDSIGFN
LIENVLCHICQKERPGAVLVFMTGWDDINALKEQLQANPLLGDPSKVLLLACHGSMASSE
QKLIFDKPEPGVRKIVLATNLAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPTWIS
KASARQRRGRAGRVQPGECYHLYPRCVYDSFADYQLPELLRTPLQSLCLQIKSLRLGSIS
EFLSRALQSPESLSVQNAIEYLKVIGAFDQNEELTVLGKHLSMLPVEPKLGKMLIFGAIF
NCLDPILTIVSGLSVRDPFLTPFDKKDLAESAKLQFSCRDYSDHLALVRAYEGWREAERD
RAGYDYCWKNFLSVQTLKAIDSLRRQFLFLLKDTGLVDENLTLCNKWSRDENLVRAVICA
GLYPGISSVVNKEKSISLKTMEDGQVMLYSSSVNGKEAKIPFPWLVFNEKVKVNSVFLRD
STAISDSILLLFGGNIKQGGLDGHLKMLGGYLEFFMSRDLASTYLSLKNELENLIHCKLQ
NPRMDIQTSEELLSAIRLLVTEDPCSGRFVYGRQEQRSKKAKTMLSSSSMNGGGGNGGDN
AKNQLQTLLTRAGNDNPSYKTKQIKNSLFRSTVEFNGMQFVGQPCANKKLAEKDAAAEAL
NWLTGNGGGAATDSRDAGNADPMSVLMKPPRRRRHNHRRRS
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgctcctgacctccgtcctgcggggtcgcgtccgccacctccgccggccccgccccctg
accatgcccacccccctcttcctctccagaaaccctaatcctagccccagcgcgactaac
ccccacctcccatcggaccccaggtccgccgccatgagcaccagcggagtctacgtgccg
ccgatgcggcggctccgctcggttatcgcttccaccaacgggagcctcgcgccacctccg
tccgccgcggcgcaggcccagcaagcggcgcggacgccggagtggccgatggacgagcgt
tcgctcagccccccgtcgccgcctcagccgcggcagcgcgatatacctcccctgccgcgg
ccaccccagccagagcatttccggcagcagagcgctgggtatgcccgctacgcttacgat
gatttctctgaggatgactcggatcgggagatggaccgtacatcagtctcaagcaagggt
ggatccactttagataatgttgatgaatggaaatggaaactgcacatgcttctccgtaat
gatgatgaacaagagattatatcaagggaaagaaaggataggcgagattttgaacaactt
gcccaacttgctgaccgaatgggtttgcacagccgtcagtattctagagttgttgtgttc
agtaaggttccattgcctaattatagatcggatcttgatgacaaaagacctcaaagagag
gtatctataccttctggtttgcaaagagaagttgatgctttgcttgcagactaccttgca
cgaaagagaacaaacagtgggaacttccctagtgcagccttctcaaggtcaagcagcaca
gacagttttgcaactgatgaaggcttctttgatcagcaagataatcaaacttccactagt
gctgtcatggagagaatccaaagaaggaaaagcctacaattgcggaaccagcaggctgct
tggcaggaatcgaatgacggtcaaagcatgattgagtttcgtcgcagtcttcctgcttat
aaagaaaagcaaactttattggaagcaatatcacagaatcaggttgttgtagtttcaggt
gagactggctgcggtaagactacacaactaccgcagtacattttagaatctgaaatcgat
gctgctcgtggtgctacgtgcagtattatttgcactcaaccaagaagaatatcagcgatt
gctgtgtctgaaagagttgctgctgaaaggggagagaaaattggtgaatcggttggctac
aaagttcgactggaaggcatgagaggaagggatacacgccttcttttctgcaccactggt
gtcctgttgcggagattgctggtggacagaaacttgaaaggtgttacccatgttattgtt
gatgaaatccatgagaggggcatgaacgaagattttcttcttattgtcttaaaggacctt
cttccacgccgtcctgagctaaggcttatattgatgagtgcaacccttaatgctgagctc
ttctcctcatactttggtggagcacccatgatacatatacctggttttacatatcctgtt
cggaatcattttctggaagatatccttgaatttactggacatcgattgactccgtacaat
caaattgatgactatggtcaagaaaaaagttggaagatgcaaaaacaagctctacgaaag
aggaagagccaaatcgcttctgctgtggaagatgcagttgaagctgctgatttgaggaac
tatagtccgcgaactcgtgattctctatcatgttggaatcctgattcgattggttttaat
ttaatagaaaatgttttatgccatatttgtcaaaaggaacgacctggtgctgttcttgta
tttatgactgggtgggatgacattaatgcactaaaagagcagctgcaagcaaatccatta
cttggagatccaagcaaagttttgctgctcgcttgtcatggctctatggccagttcagag
cagaaattaatatttgataagcctgagcctggagtaaggaaaatagttcttgccaccaat
ttggctgaaactagtattactatcaacgatgttgtttttgttgttgactgtggcaaagca
aaagagacatcttacgatgcactgaataatactccctgtttgcttccgacatggatctcc
aaggcttctgccagacaaagacggggacgagctggccgagtccaaccgggggagtgctac
catctttatccacgatgtgtatatgactcatttgctgactaccagttaccagaacttcta
cgaacccctctccagtccctctgtttgcaaataaaaagcttgaggctgggaagtatatca
gaatttttatccagagctttgcagtcaccagaatctctatcagttcaaaatgccattgaa
tatcttaaagtcattggagcatttgatcagaatgaagagttgacggttcttggaaaacac
ctgtctatgcttccagttgaacctaagctaggcaagatgcttatttttggggctattttt
aattgtctggacccaatattaaccatagtttctggacttagtgttagagaccctttcttg
actcccttcgacaagaaagatcttgcagagtcagctaaattacagttttcatgccgggac
tacagtgaccatcttgcacttgttcgtgcatatgaaggatggagggaggctgaacgagat
cgtgctggctatgactactgctggaaaaattttctttccgtgcaaaccttgaaagcaata
gattcccttcggcggcagtttctctttcttctgaaggatactggtttggttgatgaaaac
ttaactttgtgcaataaatggagccgtgatgaaaatctagttcgagcggtaatttgtgca
gggctatatcctggtatttcttctgttgtgaacaaggagaaatcaatttccctcaagaca
atggaggacggacaggttatgctttattcgagttcggtcaatggtaaagaagcaaagatt
ccattcccctggctagttttcaatgagaaggtgaaggtgaattctgtttttctccgggat
tcaactgctatatctgattctatactcttgctattcgggggcaatataaaacaaggtggc
ttggatggacacttaaaaatgcttggtggttatctggaattcttcatgagtcgtgatctt
gcatccacttacttgagtctaaagaatgagctcgagaatttaatccattgcaagctccaa
aacccaaggatggatatccaaacgagtgaagagttgctatcagccatccgtttgctggtc
actgaggacccatgcagcggccggtttgtttacggccgacaggagcaaagatccaagaaa
gcaaagacgatgctctcatcatcctccatgaacggcggtggtggtaacggcggcgacaac
gccaagaaccagctccagaccctcctgacccgggccgggaacgacaacccgtcctacaag
acaaagcagatcaagaacagcctcttcaggtccactgtcgagttcaacggcatgcagttc
gtcgggcagccgtgtgcgaacaagaagctcgccgagaaggatgccgcggcagaggcactg
aactggctcacagggaatggtggaggtgcagccactgactctagggatgcagggaatgcg
gatccgatgtccgtgctgatgaaaccaccgcgcaggaggcggcataaccatcggaggaga
agctga
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