Panicum hallii (Hall's panicgrass): 112893040
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Entry
112893040 CDS
T07366
Name
(RefSeq) cleavage stimulation factor subunit 77
KO
K14408
cleavage stimulation factor subunit 3
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112893040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112893040
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
112893040
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
PRP6_TPR
TPR_YpiA_C
CFAP70_mid_TPR
TPR_2
TPR_16
TPR_15
TPR_YpiA
MNE1
QRICH1
FTCD_C
TPR_9
NRDE-2
TPR_8
Motif
Other DBs
NCBI-GeneID:
112893040
NCBI-ProteinID:
XP_025815971
LinkDB
All DBs
Position
5:58116060..58125786
Genome browser
AA seq
754 aa
AA seq
DB search
MPEEKSGGGGGGGGGGHGDGGDIYNVQAAEILAKEALLLPINEAAPIYEKLLATFPTAAK
YWKQYVEAYMATNNDEATKQIFSRCLLNCLHISLWRCYINFIRRINDKRGSEGLDETKKA
FDFMLNYVGNDAASGPVWMEYITFLKSMPAVTPQEESHRMTTVRKVYQKAILVPTNHVEQ
LWKDYENFENSVSRTLAKGLLSEYQPKFNSAKAVYRERKKYIDDIDWNVLAIPPTGSYKE
EQQSMAWKRLLAFEKGNPQRIDVTTANKRVTFTYEQCLMYLYHHPDIWYDYAMWHAKNGS
MDSAAKIFQRALKAIPDSEVLKYAFAEMEESRGVIQTAKTIYESLLGENASVTSLAHIQF
IRFLRRTEGIEAARKYFLDARKSPSCTYHVYVAYATMAFCLDKDAKVAQSVFEAGLKRFM
QEPGYILEYADFLCRLNDDRNVRALFERALSLLPPEKSIEVWKRFVQFEQTYGDLSSMLK
VEQRRKEALSRTSEDVLSASENTLHDVVSRYSFMDLWPCSSKELDYLVRQEWLAKNTVKV
DRSATLNTGSMLDKGTVGISASARSLPRSGKVVRPETSQMVIYDPRQMKGPEFSAATSGY
TKEVEDMLKMLSPSTMSFIKNLPAIEGPSPDIDVVLSVLLQSTLPVAQNAGKAGGASELS
GVGKSGLNQNGSVHRPPRERRKDAGRHGVQEEEDAATVQSQAAAPRDIFRLRQIQRSRGL
GVGGAAAASQSGSSAFSFSGGGSAFSGDHSAGTD
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaagagaaatcaggaggaggaggaggaggcggaggcggcggccatggcgatggc
ggcgacatctacaacgtccaggccgccgagatcctcgccaaggaggccctcctgctcccc
atcaacgaggccgcccccatctacgagaagcttctcgccaccttccccacagctgccaaa
tactggaagcagtatgtcgaagcctacatggccaccaacaatgacgaagccaccaagcag
attttcagcagatgcctgctcaactgcctccacattagcctttggcgctgttacatcaac
ttcatcaggagaattaatgataaaaggggctccgagggtcttgatgagacaaaaaaggcc
tttgacttcatgctgaactatgttgggaatgatgccgcttctggccctgtttggatggag
tatattacattcttgaagtcaatgcctgctgtgacgccccaggaagagtcgcatcgcatg
actactgtacgtaaagtgtaccagaaagcaattttagttccaactaatcatgtagaacag
ctatggaaggattatgagaacttcgagaattctgtcagccgcaccttggcaaaaggtttg
ttatctgaatatcaaccaaaatttaacagtgctaaagctgtatatagagagcgaaaaaaa
tacatagatgatattgattggaatgtgctggccatcccccctacaggctcttacaaggaa
gagcaacagtctatggcatggaaaagactcttggcatttgaaaagggtaatcctcaaagg
atagatgttacaacagctaataagcgtgttacgtttacttatgagcaatgcctgatgtat
ctatatcatcatcctgatatatggtatgattatgctatgtggcatgcgaagaacggttct
atggattcagcagctaaaatatttcagcgtgctctaaaagcgatccctgattctgaagta
cttaagtatgcttttgctgaaatggaagagtccagaggagtaatacagactgcgaagaca
atatacgagtctcttctaggtgaaaatgctagcgtgacctcacttgcacacattcagttt
attcggtttctaaggagaactgaaggcattgaagcagctcgtaagtactttttggatgct
cgaaagtcaccaagctgcacttatcatgtgtatgttgcttatgctacaatggcattctgc
ctcgacaaggatgcaaaggtggcacaaagtgtgtttgaagcaggtttaaagagatttatg
caagagccaggatacatccttgaatatgcggacttcctgtgtcgtttaaatgatgataga
aatgtgcgtgctttgtttgagagagcactaagcttacttcctcctgagaaatccatagag
gtatggaagcggtttgttcagtttgagcagacttatggggacttgtcaagcatgcttaag
gttgaacaaagaaggaaggaggctctatctaggacatcagaagatgtcctatctgcatca
gaaaacacacttcatgacgtagtttctcgatacagttttatggatctttggccatgttca
tcaaaagaattggattatctagtgagacaagagtggcttgcaaaaaacactgttaaggtt
gacagatcagctacgctaaataccggtagtatgctagataaaggtactgtgggaattagt
gcaagtgcgaggtcgctaccacgatctggaaaagttgttcgtcctgagacttcccaaatg
gttatttatgatccaagacagatgaaaggcccagagttttcggcggctaccagtgggtac
acgaaggaggttgaagacatgctcaaaatgctatctccgtcgactatgtctttcatcaag
aatttgcctgctattgaaggaccatcgccggatattgatgtggtgctcagcgtgctgctt
cagagcacattgccagtcgcacagaatgctgggaaagcaggtggcgcgagtgagctctcg
ggcgtcggcaaatctggactaaaccagaatggatctgttcatagacctccaagagagagg
aggaaggatgccggaaggcacggggtgcaggaggaagaggatgcggcgacggtacagagc
caagctgcagcgccgagggacatattcaggcttcggcagatccagaggagccgcgggttg
ggcgtgggtggtgccgctgctgcctcgcagtctggatcctcggcattctccttctccggc
ggtggaagcgccttctccggggaccactctgcgggcacagactag
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