Panicum hallii (Hall's panicgrass): 112893122
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Entry
112893122 CDS
T07366
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112893122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112893122
03012 Translation factors [BR:
phai03012
]
112893122
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112893122
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112893122
Translation factors [BR:
phai03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
112893122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
R3H
HA2_C
HA2_N
Ank_5
Ank_2
nSTAND3
ATPase
AAA_19
AAA_22
AAA_23
Ank
AAA_7
Rad17
AAA_25
AAA_16
PhoH
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
112893122
NCBI-ProteinID:
XP_025816075
LinkDB
All DBs
Position
5:complement(8669002..8678329)
Genome browser
AA seq
1194 aa
AA seq
DB search
MGRKGKGAAARKAGKAPSAAGAMNETTLVRVSKALDDFRASDAEVYTFEADISKEERAEI
HEMCRKMGMKSKSSGVGTRRRLSVYKSKRKQGPDMEEGPTHLGFSEESRHVLQDLFTHYP
PDDADLNGDANRNSSDKAANIKRKTDTAFCRPAMSKHDITKKVEMFCTKINGSPHLRKIM
EDRSKLPISSFKDVITSTLDNHQVVLISGETGCGKTTQVPQYILDHMWGKGESCKIICTQ
PRRISAISVAERISAERGEAVGDTVGYKIRLESKGGKNSSVMFCTNGVLLRVLIGRGTNT
SKTRNPKQSLDDTILGISHIIVDEIHERDRFSDFMLTILRDLLPMYPHLRLVLMSATIDA
VRFSQYFNGCSVIQVPGFTYPVKTYYLEDVLSILQSVGDNHLSTTTSDKKQSSVLTEEFK
SSMDDSINLALVNDEFVPLLELISAEQNPEIYNYQHSETGVTPLMVFAAKGQLGDVCMLL
SFGVDCSAQDHDGKSALDWAQQEKQQEVYDVIMKHMECSSAKSTEDNELLNKYLATINPE
HIDTLLIERLLGKICVDSNEGAILVFLPGWEDINQTREKLRASPFFRDSSRFLILSLHSM
IPSLEQKKVFKRPPAGVRKIILSTNIAETAVTIDDVVFVIDSGRMKEKSYDPYNNVSTLH
ASWVSKASARQREGRAGRCQAGICYHLYSRFRAASLPDYQIPEIKRMPIEELCLQVKLLD
SNCRIADFLKKTLDPPITETIRNAITVLQDLGALTQDEQLTELGEKLGSLPVHPCTTKML
LFAILMNCLDPALTLACAADYRDPFLLPMAPDERKSATAGKVELASLYGGFSDQLAVVAA
FDCWRRAKDRGQESQFCTKYFISSNIMQMLSNMRKQLQSELYQRGFVPADTSACSLNSND
PGIMRAVLMAGAYPMVGRLLPPRKNARNTVVETASGGKVRLHPHSCNFNLSRSKSSGNPL
LVYDEVTRGDGGMYIKKCSVVGSCPLLLLASEMVVAPPDDDSDEEEDSSEDGAEKSTLIQ
HRKEIMSSPDNTVSVVVDRWLRFDASALDVAQIYCLRERLASSILFKVKHPQDVLPPVLG
ASMYAIACILSYDGLPDMCPSNDLLQNSVEARRFSLGKKGYIPPGGYLRSFLVDRAHHAP
YSQNSSNHPGGASAYTQPSRAPVGRFDQSQRSFRNSGPGSSKPRSFKRQRNTAL
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggggcggaaggggaagggcgcggcagcgcggaaggccgggaaggccccgtctgccgcg
ggcgcgatgaacgagacgacgctggtgcgcgtctccaaggcgctcgacgactttcgcgcc
tccgacgctgaggtgtacacatttgaagctgatatatccaaagaagagcgagcagaaatc
catgagatgtgtagaaaaatgggcatgaaatccaaaagttctggggttgggacacggcga
cgcctctctgtttataaaagtaaacggaagcaggggcctgatatggaagaaggccctacc
caccttgggttttctgaagagtcgagacatgttttgcaggatttatttacgcattatcct
cctgatgacgctgatttaaatggagatgccaaccggaattctagtgataaggctgcaaac
atcaaacggaaaacagatactgccttttgcaggccagcaatgagcaaacatgatataaca
aagaaagttgagatgttttgcactaaaataaatggatccccacatttgaggaagatcatg
gaagacagatcaaagcttcctatttcatcctttaaggatgttatcacttcaactttggat
aatcaccaggtggttcttatttctggagaaacaggctgcggtaaaaccacccaggttccg
caatacatcttggatcatatgtggggcaaaggtgaatcatgtaagatcatatgcactcaa
ccacgtcggatatcagctatttcagttgctgagcgaatatctgctgaaagaggagaggct
gttggtgatacagttggatataagatacgtctagagtcaaaaggagggaagaattcatca
gtcatgttctgcacaaatggcgttcttttgagagtactgataggaagaggaactaacacc
tcaaaaacacgaaatccaaagcagtcactggatgatacaattttgggaatatcacacatc
attgtggatgaaatccacgaaagggataggttttctgatttcatgctgactattctaaga
gatttgttgccgatgtatcctcatcttcgtttggtgctaatgagtgcaacaatcgatgct
gtgaggttttcacaatacttcaacggatgctcagtcattcaagtccctgggtttacctat
cctgtcaaaacttactatttggaggatgtgctttctattctgcaatctgtgggtgataat
catcttagtactacaaccagtgataaaaaacagagcagcgttttaactgaagagtttaaa
agctcaatggatgattcaattaacctagctttggtcaatgatgaatttgttcctctcctt
gagctaatttctgcagagcagaacccggaaatctacaactatcagcattcagagactggt
gtaacacctttaatggtttttgctgcaaagggtcagctaggggatgtctgtatgctttta
tcttttggtgttgattgttcagcacaggatcatgatggaaaatctgcattagattgggca
caacaagaaaaacaacaagaggtttatgatgtaatcatgaaacatatggagtgtagttca
gcaaaatcaactgaagataatgagctgcttaataagtacttggcaactattaacccggag
cacattgatactttgctaatagaacggttgcttggaaaaatttgtgtggattccaatgaa
ggagctatcttggtatttcttcccgggtgggaagatatcaatcaaacacgggaaaagtta
cgtgcttcgccattctttcgggattcatcaagatttcttatattgtcacttcattcaatg
attccgtctttagagcagaaaaaggttttcaaacgtccacctgcaggggttcgtaaaatt
attctctcaaccaatattgcagagactgctgtgacaattgatgatgttgtttttgtcata
gatagtgggagaatgaaagagaaaagctatgatccatacaataatgtgtccacgcttcat
gcttcctgggtttcaaaagctagtgcaagacaacgtgaagggcgtgctggtcgttgtcag
gcaggaatttgctatcacctttactcaaggtttagagcagcatcattgccagactaccaa
attcctgaaataaaaagaatgccgattgaagaactttgtttgcaggtcaaactgcttgat
tcaaactgccgaatagcagactttctgaagaaaacattggaccctccaattacagaaact
ataagaaatgccattactgtgcttcaggatcttggtgctttaacacaagatgaacaacta
acagagttaggtgaaaaactgggttctcttccggtccatccatgcacaaccaagatgctc
ctgtttgctatattaatgaactgcctggatccagcattgacattggcatgtgcagcggat
tatagagatccattcctccttccaatggctccagatgagaggaaaagcgcaactgctggg
aaagttgagcttgcttcattgtatggtgggttcagtgaccagcttgctgttgtggcagca
ttcgactgctggaggcgtgccaaagatagaggccaagagtctcaattttgtacaaagtac
tttatctcttcaaacatcatgcagatgctatcaaacatgaggaaacagcttcagagtgaa
ctgtatcaaagagggtttgttcctgcagatacatctgcctgcagcttaaactcaaatgat
ccaggtatcatgcgtgctgttcttatggctggagcttacccaatggtggggagattgcta
cctcctcgcaaaaatgctagaaatacagttgtggaaacagcaagtggtggcaaagttcgt
cttcatccacattcgtgcaattttaacctatcacgtagtaaatcttctgggaacccactg
ctggtatacgatgaggtcactcgaggtgatggtggaatgtacataaaaaaatgctcagtt
gttgggtcatgtccattgcttctgctcgcttcagaaatggttgttgctccacctgatgat
gacagtgatgaagaggaagattccagcgaggatggagctgagaaaagcactttgatacag
cacagaaaagagattatgtcttctcctgataacactgtttcagttgttgttgatcgttgg
cttcgatttgatgcttcggctctggatgttgctcaaatttactgcttaagagaacgtcta
gcatcttctattcttttcaaagtgaaacatcctcaagatgttctcccgccagtccttgga
gcatcaatgtatgccattgcatgcatcctctcatatgatggcttgcctgatatgtgtccg
tccaatgatcttttacagaattcagtggaagctagaagattctcactggggaaaaaaggc
tatattccacctggtggttacctcaggtccttcttagttgatagggcacatcatgcacct
tattctcaaaactcgtctaatcatccaggaggtgcttcagcgtatactcagccatccagg
gctcccgttggcaggtttgatcaatcccagcgttctttccgcaattctggacctgggagt
tcgaagccacggtctttcaaaaggcagcgcaatacagcactgtaa
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