Panicum hallii (Hall's panicgrass): 112893271
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Entry
112893271 CDS
T07366
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112893271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phai03041
]
112893271
03009 Ribosome biogenesis [BR:
phai03009
]
112893271
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112893271
Spliceosome [BR:
phai03041
]
Complex A
U1 snRNP components
U1 related factors
112893271
Complex B
112893271
Ribosome biogenesis [BR:
phai03009
]
Eukaryotic type
Pre-60S particles
Helicases
112893271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HAD_Pex22
Motif
Other DBs
NCBI-GeneID:
112893271
NCBI-ProteinID:
XP_025816290
LinkDB
All DBs
Position
5:complement(57373812..57377664)
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AA seq
492 aa
AA seq
DB search
MSRFDGRAADPGSYRDRRSEGAFGGGSKAFAAPSKADASAAAELDGLPRFEKNFYVESPA
VAGMTEDEVEVYRRRREITVEGRDVPKPVRDFRDVGFPEYVLQEITKAGFVEPTPIQSQG
WPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAPTRELAVQIQ
QEATKFGASSKIKCTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESHHTNLRRVTY
LVLDEADRMLDMGFEPQMKKIVSQIRPDRQTLYWSATWPKEVEQLARNFLFDPYKVTIGS
EELKANHSIVQHVEILSESQKYNKLVNLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGW
PALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYV
HRIGRTGRAGAKGTAYTFFTAANARFAKELINILEEAGQKVSSELAAMGRGAPPPSGYRD
RYRGHGAGRSWS
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcttcgacggccgcgccgcggacccgggctcctaccgcgaccgccgcagcgag
ggggcgttcgggggcgggtcgaaggcgttcgcggcgccgagtaaagcggatgcctctgcg
gcggcggagctggatgggctgccgcggttcgagaagaacttctacgtggagtctcccgcg
gtggccggcatgacggaggacgaggtggaggtgtaccgccgccgccgggagatcaccgtc
gagggccgcgatgtgcccaagccggtgcgcgacttccgtgatgttggtttcccagaatat
gtgttgcaagaaatcacaaaagctggctttgtggaacctactcctatccaatcacaaggt
tggccaatggcacttaggggtcgtgaccttattggcattgcagagacaggatcagggaaa
actcttgcttaccttttacctgccattgttcatgtgaatgctcagcctattcttgctcct
ggggatggtccaatcgtcttggtgttagctcctacacgtgaacttgctgttcagatacag
caagaggcaaccaaatttggtgcctcatcgaagataaaatgtacttgcatctacggtggt
gtgccaaaaggtccacaagttcgtgatcttcaaaaaggtgtcgaaattgttatagccaca
ccaggacgactaattgatatgatagaatcacatcatacaaacttgcgaagggttacatat
cttgttctagatgaagctgaccggatgctagacatgggctttgaacctcagatgaagaaa
attgtttctcagattcgtccagatcgccaaacactttactggagtgctacctggccgaag
gaagttgagcagctagcaaggaatttcctttttgacccatacaaggtcactattggttct
gaagagttgaaggctaatcattccattgtgcagcatgtggagatattatctgagagtcag
aagtataacaagctggttaatctactggaggatataatggatggcagccgaattttaata
tttatggacaccaagaagggatgcgatcagattactagacaacttcggatggatggttgg
cctgctttgtctatccatggtgacaagagccaagcagaacgagattgggtcctttctgaa
tttaagtcaggcaaaagtcctattatgacagccactgatgtcgctgctagaggcttagat
gtcaaggatgtaaaatatgtcattaactatgacttcccaggatcgctcgaggattatgtt
catcgtattggtcgaactggcagagccggtgcaaaaggaacagcttacacctttttcact
gcagctaatgccagatttgccaaggaacttatcaatattctagaagaagctggacaaaag
gtcagctctgaattagctgctatgggtcgtggggcaccacctccttcaggttaccgtgat
agatataggggacatggggctggccgatcatggagttga
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