Panicum hallii (Hall's panicgrass): 112893318
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Entry
112893318 CDS
T07366
Name
(RefSeq) 5'-3' exoribonuclease 3-like isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03008
Ribosome biogenesis in eukaryotes
phai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
112893318
09123 Folding, sorting and degradation
03018 RNA degradation
112893318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112893318
03019 Messenger RNA biogenesis [BR:
phai03019
]
112893318
03009 Ribosome biogenesis [BR:
phai03009
]
112893318
03016 Transfer RNA biogenesis [BR:
phai03016
]
112893318
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112893318
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
112893318
Ribosome biogenesis [BR:
phai03009
]
Eukaryotic type
Pre-60S particles
RNases
112893318
Transfer RNA biogenesis [BR:
phai03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
112893318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
112893318
NCBI-ProteinID:
XP_025816355
LinkDB
All DBs
Position
5:52029324..52039111
Genome browser
AA seq
1071 aa
AA seq
DB search
MGVPAFYRWLAEKYPMVVVDVVEEEPVEIEGVKVPIDTSKPNPNGLEFDNLYLDMNGIIH
PCFHPEDRPSPTTFGEVFQCMFDYIDRLFVMVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
AAKDAADAAAEEERLREEFEREGRKLPPKQQSQTCDSNVITPGTEFMAVLSVALQYYIHL
RLNYDPGWKQIKVILSDANVPGEGEHKIMSYIRGQRNLSGFNPNTRHCLYGLDADLIMLA
LATHEVHFSILREVVYTPGQQDKCFLCGQVGHLAANCEGKVKRKAGEFDEKGDAIVPKKP
YQFVNIWTLREYLEYEFRMPKPPFQIDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAI
NLLIAVYKKEFSSMCGYLTDSCTPDLKRVEYFIQAVGRYEDKIFQKRARLHQRHAERIKR
EKAQAKRGDDLDPHVRDDLIVPVQRFQGSRLASGAAPAPYEQNGSHKDNKERNNRARKTA
RVSTPGSSIAAAIVEAENGLEAQERENKEELKSMLKDALREKSDIFNSENPEEDKVKLGE
PGWRERYYEEKFGARTPEQIEEIRRDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPF
ASDLKDLGHLNITFELGTPFKPFDQLMGVFPAASAHALPIQYRRLMTDPSSPIIDFYPTD
FEVDMNGKRYSWQGIAKLPFIDEARLLAEIKKVEHTLTPEEARRNSVMFDMLFVNGSHPL
SPYIYSLNSKFGHLPDRERNEIKEKLDPSASGGMNGYITLCSGDPCPPIFRSPVDGLEDI
MDNQVICSIYKLPDYHKHIARPPAGVVIPKKTVEAGDLKPPPVLWHEDSGRRPHDNSNRH
NPPGAISGRQLGEAAHRLVINSLNAQGRGQHSSPSVPYQTIMNGMHHLNVVHPNVNQGIP
PRGEQSGWYVPRGSVPSGQIPAYASSGSGHYQHERSGPSQYEQGNRGRQQIYPYSRDGYH
DTRARVPPAYGYQQTGGSMYSSQPVAAPSGRGLYGQPPSAYPGVRGGGYRPPPYGGAQQW
QQQPYSSHAGRGPYGGAPPPTRADSRAQQSQNRYGSLDRSSNRRPPSGYGQ
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtcccggcgttctaccggtggctggcggagaagtatccgatggtggtggtggac
gtggtggaggaggagcccgtggagatcgagggcgtcaaggtgcccatcgacacctccaag
cccaaccccaatggcctggagttcgacaacctctatctcgatatgaatggtatcatacac
ccctgcttccacccggaggacaggccttccccaacaacattcggtgaggttttccagtgt
atgtttgattacatcgacagattattcgtcatggttcgcccccggaggcttttgtatatg
gccattgatggtgtggctcctcgtgctaagatgaaccagcagcgctccagacgattcaga
gctgcaaaagatgcagcggatgcggctgcagaagaagaacggctacgtgaagagtttgag
agggaaggcagaaaacttcctccaaaacagcaatcgcagacatgtgattccaatgttatt
actccagggactgagtttatggctgttttatcagttgctttgcagtattacatccatctc
agattgaattatgatcctggatggaaacaaattaaagttatcttgtctgatgccaatgtt
cctggtgaaggggaacataaaatcatgtcctacattcgtggccaacggaatttgtctggt
tttaacccaaatacacgccattgcctgtatggcctggatgcagatctaatcatgttagct
ttagcaacacatgaagtacatttctcaatactgagagaggtagtttatacacctggacag
caggataaatgcttcttatgtggtcaggtggggcatttagcagcaaactgtgaaggaaag
gtgaaaagaaaagctggggagtttgatgagaagggggatgctattgttcccaagaagcct
tatcagtttgtgaatatatggacccttcgggaatacttagaatatgagttcagaatgcca
aaaccacctttccaaattgattttgaacgcattgttgatgatttcatcttcatgtgcttc
tttgttggaaatgattttcttccacatatgccaacactagagatccgtgagggagctatt
aatttgctaattgcagtatacaagaaggaattttcctcgatgtgtggctatttaactgat
tcttgcacgcctgatctgaaaagagttgaatacttcattcaagcagttggtcgttatgag
gataaaatatttcagaaaagagcccgtttgcatcagcgtcatgcggaaagaattaaacga
gaaaaggcccaagcgaagcggggtgacgatctggatccccatgttagggatgatcttatt
gtgcctgttcaacgttttcaagggtctcgcctagcctctggggctgcacctgcaccatat
gagcagaatggatctcataaagacaataaagaaaggaacaatcgagctcgtaaaactgca
cgagtatcaacaccaggttccagcattgctgcagccatagttgaagcagaaaatggcctt
gaagcccaagaacgtgaaaacaaagaagaactgaagtcaatgcttaaagatgcgcttcga
gagaagtcagatatttttaattctgaaaatccagaggaggataaggtgaaacttggagaa
ccaggatggagggaaaggtactatgaagagaaatttggggcaagaacgcctgaacagatt
gaagaaatacgcagagatgtcgttctcaaatacactgaaggtttatgttgggtaatgcac
tactattatgaaggggtctgctcatggcaatggttctatccttatcactatgctccgttc
gcttcggatttgaaggatttgggtcatcttaatattacatttgaacttgggacgccgttc
aaaccttttgatcagcttatgggtgttttcccagctgcaagcgcccatgcgctaccgata
cagtatcgccgattgatgaccgaccccagttcaccaataattgatttttatcctactgat
ttcgaagtagatatgaatgggaaaagatactcttggcaagggattgcaaaactgcccttt
atcgatgaagctcgcttgttggctgagataaaaaaagttgagcatactttgacgcctgaa
gaagcaaggagaaacagtgtcatgttcgatatgcttttcgtgaatggatcacacccgctt
tcgccttatatctactctctcaacagcaaatttggacatctgcctgacagagagagaaat
gaaattaaagaaaagcttgatccttctgctagtggtggaatgaatggctacataacactt
tgcagtggggacccatgccctcctatctttaggtctcctgtggatggtctggaggatatt
atggataatcaagtgatatgctcaatctacaagcttccggattatcataagcacatagcc
cggcctccagccggtgttgtcatacccaagaagactgttgaagctggtgatctgaaaccg
cctccagtgctgtggcatgaagatagtggcaggaggcctcatgataatagcaacaggcac
aacccgccaggagccatatcaggccgccaacttggagaggcagcccaccgactagtcata
aacagcttaaatgctcagggtagggggcaacatagtagcccatcagtgccatatcaaact
ataatgaatggcatgcaccatctgaatgtagtgcaccctaacgtcaatcaaggaattcct
ccacgaggggagcagtctggttggtatgtgcctaggggtagtgttcctagtggtcaaata
ccagcttatgcatcatcaggatcaggtcattatcagcatgaaaggtcagggccttcgcaa
tatgaacaaggtaaccgaggaaggcaacaaatttacccatattcaagagatggttaccat
gacacaagagccagggttccacctgcatatggataccagcagactggtggcagcatgtat
tcatcacagcctgttgctgcgccatcaggtcgtggactgtatgggcaacccccatcagca
tatcctggggttcgtggtggaggctaccggccccctccatatggtggagcccaacagtgg
cagcaacaaccatatagttcacatgctggaagagggccttatggaggcgcaccaccaccc
actagggctgattcacgagcacagcagtcacagaaccgttatggctctttggacagaagt
tcaaaccggaggcctccatctggatacggccaataa
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