Panicum hallii (Hall's panicgrass): 112893387
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Entry
112893387 CDS
T07366
Name
(RefSeq) nuclear pore complex protein NUP98A-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112893387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112893387
03036 Chromosome and associated proteins [BR:
phai03036
]
112893387
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112893387
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
112893387
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
112893387
NCBI-ProteinID:
XP_025816470
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Position
5:32658197..32665708
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AA seq
640 aa
AA seq
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MMGSSSSWSAQTFGSTSSSPGTGFGQTMDSVSSTPWATFSWPSPTFMVSHTPSPSGSSCC
NFKGVSEQGSRVCAYAPTAVDDPSNLYQIQSISAMLVNCNKSHEELRHEDYERGDRGGDS
QQKSITPAPIFPVSSSPSLSCSSTPSFTFRPTTHFIAPFAESTEHPPAELQPSTRGSTSS
SNPFWLPSAQSSFSSGDLQSSTQGHSSYTPGLSFYRYLPSKLASMGIQTPPPSHTEFQKN
PSTYCPRSYPSPFTAHVGGAHSASASTQSMTTATLPCPHFSTSNSAPAMCQDSIFSNSAG
ALDTALAEATSTQQGIFGQNFPTTSTQPGKSPLIGSSIAHSKPALSSDAHCTSVNVDYPN
NTVELHLPVNVRLVRIHFSSSNDGAGTSQVNSGHVAKSTEAPISLCIYPWENHELTIQSI
VRPVKDQMGKQSSSTGGSDPSKVHNSIGRPPSRSARNQEGSNGDAHSTQKSVAAPEREVI
TGSVLPWLYNADYYTLPSIVELAVKESEEPGYCSHVPHFTVGRHGYGSVRFDGETDVRKL
DIASIVEFNNREILVYRDESKTPPVGQGLNKPAEVTLLNVKCIDQKTGLQFTGGPTVDRY
KETLVQWTKEHGAEFVSFDPMKGEWKFKVKNFSQQGACRS
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgatgggctcttcttcatcttggtctgcacaaacctttgggtccacttcatcttctcct
ggcacaggctttgggcaaaccatggactccgtctcctccactccatgggctaccttctct
tggccttctccaacctttatggtgtcacatacaccttctccttcagggtcctcatgctgt
aattttaagggggtatctgaacagggcagcagggtctgtgcttatgcgccaaccgctgtt
gatgatccttctaatttgtatcagattcaatcgatttcggcaatgctggtaaactgcaac
aagtctcatgaagagcttcgacatgaagattatgagagaggggacagaggaggtgacagc
cagcagaaaagcattactccagctcctatatttcctgtgtcctcatcaccatcattatcc
tgttcaagtacaccatctttcactttcaggcccacgactcatttcattgctccatttgca
gagtccactgaacacccccctgcagaattacagccctcaacacgaggttccacctccagt
tccaacccattctggctcccatctgctcagtcatcattttcatctggagatttgcaatcc
tcaacacaaggtcatagttcttacactcctggactgtcattttatcgttacctgccctca
aagctagcatccatgggaatccaaacaccacctccatcacacactgagtttcaaaagaat
ccctccacctattgtcctagatcatacccatcaccttttactgcacacgtcggaggtgca
cattcagcttcagcatcgacacaatctatgaccactgcaacattaccgtgcccccatttt
tcaacctccaattctgcacctgctatgtgtcaggacagtatattcagcaactcagcaggt
gcattagatacagctttagcagaagcaacttctactcagcagggtatattcggtcaaaac
ttccccacgacatctactcaacctggaaaaagtccattgattggttcttcaatcgcccat
tcaaaaccagctctatcctcagatgctcattgtactagcgtcaatgttgattatcccaat
aatactgtagagttgcatcttccggtcaatgtcagattagtacgcattcatttttcatca
agcaatgatggcgctggaacttcacaggtcaattctggtcatgttgctaaatctacagaa
gcacctatttctctatgtatctatccttgggagaatcatgagctgactatccaatcgatt
gtgagacctgttaaggatcaaatgggcaaacagtctagttcaactggtggatcggatccc
agcaaagttcacaatagcattggtcgtccaccatcaagatctgctaggaatcaggagggg
agcaacggtgatgcccactcgacccagaaatcagtagctgcaccagaacgtgaagtgatc
actgggagtgtgctgccttggctctacaatgcagattactacactctgccgtcaattgtg
gaacttgccgtgaaagagagcgaagagccaggttactgttcccacgtgccgcacttcact
gtaggcaggcatggctatggcagcgtcaggtttgatggggagactgatgtgcggaagctc
gatattgcatcaattgtggagtttaacaaccgtgagatccttgtatacagagatgagagc
aagacgccacctgttgggcagggattgaacaaacctgcagaggttactctcctgaatgtg
aagtgcatcgaccaaaagactgggttgcagttcacaggggggccgactgtcgacaggtac
aaggagaccctggtgcagtggaccaaggagcacggtgcggagttcgtgtcctttgacccg
atgaagggggagtggaagttcaaggtcaagaatttcagccagcagggtgcttgccgttct
tag
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