Panicum hallii (Hall's panicgrass): 112893679
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Entry
112893679 CDS
T07366
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03013
Nucleocytoplasmic transport
phai03015
mRNA surveillance pathway
phai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112893679
09122 Translation
03013 Nucleocytoplasmic transport
112893679
03015 mRNA surveillance pathway
112893679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112893679
03041 Spliceosome [BR:
phai03041
]
112893679
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112893679
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112893679
Spliceosome [BR:
phai03041
]
Complex C
Other components
EJC/TREX
112893679
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112893679
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
112893679
NCBI-ProteinID:
XP_025816920
LinkDB
All DBs
Position
5:20051726..20056972
Genome browser
AA seq
428 aa
AA seq
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MVEAKDNEVYEEDLVDYEEEVENVADGAPTNGSADVVKKGYVGIHSSGFRDFLLKPELLR
AIEDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALV
LCHTRELAYQICHEFERFSKYLPELRVAVFYGGVHIKNHKDLLKNECPHIVVGTPGRILA
LARDKDLPLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLGECNFPSICIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNI
VVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPDQI
DTSIYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggtggaggcgaaggacaacgaggtgtacgaggaggatctcgtcgactacgaggaggag
gtggagaatgtcgccgacggcgccccaaccaacggctccgccgatgtcgtcaagaagggg
tacgtggggatccacagctcggggttcagagacttcctgctcaagccggagctgctccgt
gccatcgaggactgcggattcgagcatccttccgaagtgcaacatgaatgcatccctcaa
gccattcttggaatggatgttatctgtcaagcaaaatctgggatgggtaagactgcggtt
ttcgtcctctcaactcttcagcagattgatcctgttgctggccaagtagctgcgcttgtg
ttgtgccacacaagagagttagcttaccagatttgccatgaatttgagagatttagtaaa
tacctgcctgaattaagagtcgctgtcttctatggtggtgttcacataaaaaatcataag
gatctgttgaagaatgaatgcccccatattgtggttggcacgcctggaaggatacttgct
ctagctagagataaggaccttcccttgaagaacgtgcggcatttcattcttgacgaatgt
gataagatgcttgaatcacttgacatgcgtagagatgtccaggagatcttcaaaatgact
ccccatgataagcaagtgatgatgttttcagcaaccctcagcaaggaaattcgcccagtt
tgcaagaaattcatgcaagatcctatggaaatttatgttgatgatgaggctaaactgacc
cttcatggtctagttcagcactacatcaaattgagtgaggcagagaagaatcggaagttg
aatgatctcttagatgcgctcgacttcaaccaagttgtgatatttgtcaaaagtgttagt
agagctgcagagctgaacaagttgctcggcgaatgcaatttcccctcaatctgcatacat
tctggaatgacgcaagaagagaggttgacccgatacaagaacttcaaggaaggacacaag
aggattcttgtggctaccgatttggtcggtaggggaattgatattgagcgggtcaacatt
gttgtaaactatgatatgccagattctgctgatacgtacttgcatagggttggtcgggct
ggacgttttggcaccaagggacttgcaataacctttgtttcttctgcatctgattctgat
gttctcaatcaggtgcaagaaaggtttgaggttgacataaaggagctgcctgatcagatt
gacacttcaatatacatgccatcttga
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