Panicum hallii (Hall's panicgrass): 112894060
Help
Entry
112894060 CDS
T07366
Name
(RefSeq) uncharacterized protein LOC112894060 isoform X1
KO
K24155
rabconnectin-3a
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
112894060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
phai04131
]
112894060
Membrane trafficking [BR:
phai04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112894060
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
112894060
RAVE complex
112894060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_Prp19
Beta-prop_EML_2
WDR55
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
EIF3I
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-GeneID:
112894060
NCBI-ProteinID:
XP_025817419
LinkDB
All DBs
Position
5:complement(20426835..20443326)
Genome browser
AA seq
2471 aa
AA seq
DB search
MGERDALPPLPLALGPPHLIPPAPTHDPRAIALLPDLGGLPWVAYAAGSFLVVSHLPSPS
RDDTSDGAGDDGCSPFFRQVIDLHAPVSAVAWCGRGSAEVAAAADNSVSIFQPAPDASSP
GSFGWLLRWSITETFAITAVAWTGAGDGIVAVGAGVSMWARVQSSWQLAWRSIPKVPQSL
VSSTRFVQGPVATVAAVAPAEGSVPVLVFLNDAKRGLEQAELVHPQPICMIQWRPWLLCV
SDRSEIRREILMTCCLDGTVRLWSEDELVKSKKQRGLQISFSVIAVIEVNNTLNGVLGVD
ITVRWSMESGSVVSRDEEGKFELFSGDSRESQVGKCEWLVSVGPGPCVNYWAVHCLDDVF
PPPRYPRITLWKQSKLQGWGESYVKLAPPKSLEQPIFVDAIVSRRLCSDPPTTCSLLHLL
PDDSFVWSALSNSLLPNSGTHVSSESANSISCCLTKPVKQDGHKGRIRQVSVHPYSCEIQ
IAVSMDSNRMLFFWSLSTFSTLIPTLHAPTYPLWKPLCKFDLRNSSEDVEYSCLCWAPSV
SRDFRFLVLGGENGADCFIVRIKKEVLTCQRIFTIPFLGQRNAEGPPDSIHTIPLDSKCS
GCFVNNSFLVVCIWRKSFQAFSWKVVLHSENQLDSGRCLCGFDVSSLSTTNQVRHVTCFD
SETFSAVIYEGSSVFTSSLEGEYPTCISVVPLNNTVLPIQHEPYRTVPGYHIATGCSDGT
VKLWKMSCADNSLQTEKEGHIWELVGMYGAHRGPVSMVVLSNCGRVVTVCRNLKKNSTSI
NIWEAVKLIGDGSFLLEDAVILQDYIVGLEGLSLGDGRFLLAVYLPNELRIYSHKHPSFQ
NVLHNDNSKEEHLWSCIALSHSHHDIAGFLWGPKATITLVHENHLSLFSSWLVTGADEYT
TQIRACPIDVHEMLPCANNFNETAFGKFKLPETYGSRTIVSNGVLRTDQDDSCCSHSLWN
LLDIADKLSRPVASYNPRALVQYLYSGEWKRANAALQHLFKSMKASEASKITSKCSSCRK
SCHSIPELPLSEYFVETMSNNISNKGFLWGEDRSNTTFNLLSPSNSFLYGDGNLGTSTTT
SASKKSEIAELLDKNFNVYGISDTERTQILAISDLMLEISDQTRSSPYKSLDEAGRRFWV
AVQFRQLHALRRSGYSSSSEGFLVDSASIAWAFQSDCQDDLLNSVLPLEPTWSEMQKLGI
GLWYTNVSQLRTRMEKLARLQYLKSKDPKDCALLYIALNRIKVLVGLFKISRDEKDKRLY
EFLSRNFQEERHKAAALKNAYVLMGRHQWELAIAFFLLGDDFSSAVNVCAKNLQDEQLAI
VICRLVEGSGGPLERNLISNVLLPRSVEKGDNWLSSLLEWMLGNYYQSINRLFGCHPKLE
VDESKIVGAPNVFSDPEVGQYCAILSTKNGFRNCVGEAVSAKLSKLSFAMAACALNKCGL
PLEALECLCSNLGIDGKESINVPSGGDHKIFDGMLNPFSVSKNWLSSSVISDFESDLKIT
MASKYLSHLLRNHLFCSQCNASLSEDKVLNDYNGHQIEELTHDVTAVMSIFDRRFSLKFA
DIAEKILIFCCHDGLLFLAYALLWGCKSPDVAIDRHGLECFSLRPINYLLLVSFKESCKF
LSRHVVYSSFMRFVLNMELTNTTACTPKENHKYIISGLSNYLNASRLLLRHDNGGNDILD
NRSAMLTVMDLLEYIIEFSFSWLYCDIKELLIMINPVLAASVKGESFKVLLDRLKHAMLH
RSHDVPLNTEGGMPSASIHKIQLKKSEISNHLIDEKWHLLGASLWIRLTSVMQHYLREFV
EKERREHETGGSDSEFKGHFSSVAAKFTMNSIHFVSSSLVKLHASFLRKNLPINSHSSVL
FWLECNSSQQWSDSNSYDQLSRILQLANSENMEVLFNNLWEISVNSVDICNAFVNEGVNC
FSLSNINVTRSWKDIRGTAVECKNNSTQRSGEEHKHGLRSKNNDKRQGFADEASSNGEVF
PETKRKELIVQKDFQSPMELLSRSGELLEAICLNSINEKQAAIATNRKGLVFFNWSEKKH
CKKFAEYVWSRSDWPLDGWAGCESTPTPTFISSGVGLGRKKGSQLSSGGATIGLGSLAKP
GRDLTGGGAFGIPGYAGIGASGFGWGEPEEFEDFVDPPATLENIHSRALSRHPSLPLFLV
GSSNTHVYLWEFGKDSAMATYGVLPAANIPPPYALASISAVQFDYYGQRFATAALDGTVC
TWQVEVGGRSNVHSTDSSLCFDSHASDVSYVSASGSVVASAGSNSNGANIVIWDTLSPPG
TCQTSIMCHEGGARSLSVFDSDRGCGSISPLVVTGGKSGDVALHDFRFLSTGKSQHNRIS
KEHGVKEPSRHDTESGTSGGTANGMVWHIPKAHLGNVTKVTTIPNTSLFLTGSKDGDVKL
WDAKNSQLVFHWPKLHERHTFFQPTSRGFGGVVRAAVTDLQVLSHGFISCGGDGSVKLVQ
LKDDLPVVHQQ
NT seq
7416 nt
NT seq
+upstream
nt +downstream
nt
atgggggagcgagacgcgcttccgccgttgcccctcgccctcggcccgccgcatctgatc
ccgccggcgcccacccacgacccccgcgctatcgccttgctccccgacctaggtggcctc
ccctgggtcgcctacgccgcgggatccttcctcgtagtatcccacctcccttccccttcc
cgggatgacaccagcgacggcgccggggatgacggctgctccccgttcttccgccaggtc
atagacctccacgccccagtgtccgccgttgcctggtgcggtcgcgggagcgcagaggtc
gccgccgccgcagacaactccgtctccatcttccagccggcgcccgacgcctcttcccca
ggttcgtttggttggctcctgagatggtctatcaccgagacatttgccatcaccgctgtg
gcatggacaggcgcgggcgacggcattgtggcagttggtgcaggtgtgtccatgtgggcc
agagtgcagtcctcctggcagctcgcctggaggtctattccgaaggtgccacaatccctt
gtctcctctacccggtttgtgcagggccctgtcgcaacagtcgcagctgttgctccggct
gagggcagtgtgcctgttcttgtgtttctgaatgatgccaaaagggggctggagcaagcc
gagcttgtgcatccgcagcctatttgcatgatccagtggcgaccctggttgttatgtgtc
agtgatcggtctgagatcaggagagagatcctcatgacttgctgcttagatggcactgtc
cggctttggagtgaggatgagctggtcaagtcaaagaagcaacgtggtttgcaaatatca
ttcagcgtcattgcagtaatcgaggtgaacaacactctgaatggagtccttggagttgat
attactgtcagatggtctatggaatctggcagtgttgtgtcgagagatgaagaaggtaaa
tttgagttgttttcaggtgattcgagggagagccaagttggcaaatgtgagtggcttgtt
agtgttggcccagggccttgtgttaactattgggctgtccattgtctagatgatgtattt
ccaccaccaaggtatccacggattactctatggaaacagagcaaactgcagggctggggg
gagtcctatgttaaattggctcctccaaaatctctagagcagccaatatttgttgatgct
atcgtatcaagaaggttatgttctgacccacctacaacatgctctttgctgcatttgctg
cctgatgattctttcgtttggtcagccttatccaacagtttgttaccgaattctgggacc
catgtttcaagtgaatcagctaatagtatatcatgttgtttgacaaaacctgtcaaacaa
gatgggcataagggtaggatcagacaggtctctgtccatccatatagctgtgaaatacag
atagctgtttcaatggattcaaacagaatgttatttttctggtctctgtcaaccttttca
actctcataccaacattgcatgcacctacatatcctttatggaagcctttgtgcaaattt
gatttgcgtaacagttctgaagatgtggagtactcatgcttgtgttgggcgccttctgtt
agtcgtgattttagatttcttgtccttggaggtgaaaatggagctgactgtttcatagtc
agaattaagaaagaggttcttacatgccagaggattttcacgatccctttccttggacag
agaaatgcggaaggaccccctgacagtattcataccataccattggattctaaatgcagt
gggtgttttgttaacaacagcttcctagtagtatgcatatggaggaagagcttccaagct
ttttcatggaaagtagtcttgcattcggaaaatcaacttgacagtggaagatgtttgtgt
ggttttgatgtgagctctctttctaccacaaaccaagtgaggcatgtaacttgcttcgac
agtgaaactttttcagcagttatttatgaaggttcttcagtctttacttctagcctggag
ggagaatatcccacatgcatttctgtagtgccgctgaacaatacagtcttgcctatacaa
catgaaccttacagaactgttcctggttatcatattgctactgggtgctctgatggcact
gtgaaactttggaagatgtcttgtgcagataactctttgcagactgagaaagagggacac
atctgggaactagtaggcatgtatggtgctcaccgaggaccagttagtatggttgtacta
tcaaattgtggtagagttgttactgtttgcagaaatttgaagaagaatagcacctctatt
aatatctgggaagcagttaaactcatcggggatggtagttttctgctagaagatgcagta
atcttgcaagattatattgttggtttagaggggctatccttaggtgatggacgatttcta
cttgcagtttatctacctaacgagctgcgcatatattctcataagcacccttcctttcag
aatgtgctgcacaatgataattcaaaagaagaacatctttggagctgtattgcgttatcc
cactctcatcatgacattgctggctttctttgggggccaaaggcaactatcacgcttgtt
catgagaatcatctttcactcttcagttcatggctagtaacaggagctgatgagtacact
acccagatacgtgcttgcccaatagatgtgcatgagatgttaccatgtgctaacaatttc
aatgaaactgcttttggtaaattcaagttaccagaaacttatggtagcaggactattgtt
agcaatggtgtattgcgaacagaccaagatgatagttgctgttctcatagtttatggaac
ttgttggatatagctgataaactaagcagacctgtggcatcgtataacccaagagcactt
gtacagtatctttattcaggtgaatggaaacgtgcgaatgctgctctgcagcatcttttt
aaatccatgaaagcaagtgaagcttcaaagatcacgtcaaagtgcagttcatgccgtaaa
tcatgtcacagtattccagaacttcctttatctgaatactttgtagaaaccatgtccaac
aacatttctaacaaaggctttttgtggggtgaagacagaagtaacacaacctttaatttg
ctgtcaccttcaaattcatttctttatggggatggtaatttaggtaccagcactaccact
agtgcgtctaaaaaatcagagatagctgagctccttgataagaacttcaatgtatatggc
ataagtgacactgagagaactcagatacttgcaatttctgatcttatgttagaaatctct
gatcagacccgttcctctccctacaaaagccttgatgaagcaggaagaaggttctgggtt
gctgtgcagttccgacagcttcatgctcttaggagatctggatactcatctagtagtgaa
gggttccttgttgattctgcttcgatagcgtgggccttccaatctgattgtcaggatgat
ctacttaattctgtgcttcctttagagccaacttggtcagagatgcaaaagcttggtata
ggattatggtataccaatgtgtcccagctaaggacaaggatggaaaagttggcaaggttg
caatatcttaaaagcaaggaccctaaggactgtgctctgctctacatagcattgaacaga
ataaaagtgttggttggtctcttcaagattagcagagatgaaaaggataaacgtctatat
gagtttctctccaggaacttccaggaagaaagacacaaagctgctgctctaaaaaatgct
tacgtactaatgggaaggcatcaatgggagcttgctatagcatttttcctgcttggtgat
gatttttcatcagcagtcaatgtttgtgcaaagaaccttcaagatgaacagcttgctatt
gtaatttgtcggcttgttgaaggatccggagggcccctggagcgtaatctcatttctaat
gtccttcttcctcgttcagttgagaaaggagacaactggctttcaagcctgcttgagtgg
atgttggggaactattatcagtctatcaatagattatttggttgccatcccaagttggag
gttgatgagtctaaaatcgttggtgctccaaatgtgttttcagacccagaagtgggtcag
tactgtgcaattctctcgacaaaaaatggttttagaaactgtgttggtgaagctgtatct
gcaaaattatctaagctttcatttgcaatggctgcatgtgccttgaacaagtgtggacta
cctcttgaagcacttgaatgcctatgttctaatttgggcatagatggcaaggaaagcata
aatgtaccttctggtggagatcacaagatttttgatggaatgctgaaccctttctctgtt
tctaaaaattggctatcttcatctgtcattagtgactttgagtccgaccttaaaataact
atggcttcaaaatatctatcccaccttctgagaaatcacttgttctgttcacaatgcaat
gcatcattatctgaagacaaggtccttaatgactacaatggtcatcaaattgaagaactt
acacatgatgttacagcagtaatgtcgatattcgatagaaggttctctttaaaatttgct
gatatagctgagaagattctaatcttttgttgccatgatggtttattgtttcttgcgtat
gctttgttatgggggtgtaaatcaccagatgttgccattgaccgtcacggtcttgaatgc
ttctctctccgtccgattaattatctgttattggtttcattcaaagagagctgcaagttt
cttagtcgtcatgttgtctattcctccttcatgcgtttcgttctgaatatggaactcaca
aatactactgcatgcacacctaaagagaatcataagtacattatatcagggttgtcaaac
tacctgaatgccagcaggttgcttctaaggcatgacaatggtggaaacgatattctagat
aacaggtcagctatgcttacggttatggatctgcttgagtacattatagagttttccttt
tcttggctgtattgtgacataaaggaattgcttatcatgatcaatcctgtcctagctgct
tccgttaaaggggagtcctttaaagtactattagatcggttgaagcatgctatgctccac
agaagtcatgatgtaccattgaatacagaagggggaatgcccagcgcttcaattcataaa
atacagctaaaaaagagtgaaatttcgaatcatttaattgatgagaagtggcatttgtta
ggtgcttctttgtggattcggttgacatccgtaatgcaacattatttgagggagtttgtt
gaaaaagagagacgtgaacatgaaactggtggtagtgattctgagttcaagggtcatttc
tcttcagttgctgcaaagtttactatgaattccatacattttgtgtcatcttcgttagta
aaactgcacgcatcattcttgaggaagaatttaccaataaattcacattctagtgtgctc
ttctggttagaatgtaattcatctcagcaatggtcggacagcaatagttatgatcagctt
tcaagaattttgcagcttgcaaacagtgagaatatggaggtgttgtttaacaatttgtgg
gaaatttctgttaattctgtggatatttgtaatgcttttgtgaatgaaggggttaattgc
ttttcattgagcaacataaatgttactagatcttggaaggatataagaggtactgcagtt
gagtgcaaaaacaatagtactcaaagaagtggagaagaacataaacatggacttcgctcg
aagaacaatgataaaagacagggatttgctgacgaagcgtcatctaatggagaagtcttt
cctgaaactaaaaggaaggagttgatagtacaaaaagattttcaaagcccaatggaactt
ctaagtagaagtggggaactccttgaggcgatatgtcttaactcaatcaatgagaaacaa
gctgctatcgctactaaccgaaagggccttgttttcttcaactggagtgaaaagaaacat
tgcaagaaatttgcagaatatgtctggtctcgatctgattggccattagatggctgggct
ggttgtgaatctacaccaactccaactttcatttcatctggtgttggtcttggcagaaaa
aaaggatcccaacttagttcaggtggagcaactattggtttgggttcattggcaaaacct
gggagagacctaactggtggcggagcatttggaattccagggtatgctggtattggggcc
tctgggtttgggtggggtgaacctgaagaatttgaggattttgtcgatcctccggcaaca
cttgagaacatccattcaagagcattatcccgacatccttcgttaccattatttcttgtt
ggttcaagcaatacacatgtgtatctatgggagtttggtaaagatagtgccatggctaca
tatggtgttctgcctgctgctaacattccaccgccttatgcactagcttccatatcagct
gttcaatttgattattacggacagcggtttgccactgctgcattagatggtaccgtttgt
acatggcaagttgaggtgggtggaagaagcaatgttcattctacagattcatccctatgc
tttgatagccatgcctcggatgtctcttatgtgtctgcaagtggatcagttgtcgcttct
gctggatctaattcaaatggtgcaaatattgttatctgggataccctgtctccacctggc
acatgtcaaacttctattatgtgtcatgaaggaggagcacggtctctttcagtgtttgat
agtgatagaggttgtgggtctatctcaccactggttgtaactggtgggaaaagcggagat
gtagctttgcatgatttccgcttcctttctactggaaagtcccagcataatagaatctcc
aaggagcatggtgtcaaggaaccttccaggcacgataccgaatctggtacttctggtggt
actgctaatgggatggtctggcatataccaaaggctcatctaggaaatgtcaccaaggta
acaaccatcccaaatacgagcttgttcttaactggaagcaaagatggagatgtaaagctt
tgggatgcgaaaaattctcagctggtctttcactggccaaagttgcatgagcggcacacc
ttttttcaaccaacttccaggggttttggcggtgtagttagggctgctgtaacagacctc
caggtgctgtctcatggtttcatttcgtgtggaggtgatggctctgtgaagctcgttcag
ctaaaagatgatcttcctgtggtacatcaacaataa
DBGET
integrated database retrieval system
