Panicum hallii (Hall's panicgrass): 112894151
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Entry
112894151 CDS
T07366
Name
(RefSeq) flowering time control protein FY
KO
K15542
polyadenylation factor subunit 2
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112894151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112894151
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
112894151
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF4
Beta-prop_IFT122_1st
eIF2A
Beta-prop_SCAP
NBCH_WD40
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_NOL10_N
WD40_like
WD_LRWD1
DUF3642
WDR54
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
112894151
NCBI-ProteinID:
XP_025817558
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Position
5:1269787..1276052
Genome browser
AA seq
710 aa
AA seq
DB search
MMQQQQQQQQLPPPPQHQPPQGGGGGEFYRGPPMRQLSAASSTNLTPEYAAHPGPPPPQQ
HQPPYDAYGDNFGAKRMRKPVQRRTVDYTSSVVRYVQARMWQRDARDRFTLQPTPAAVLD
MLPSVAYPDNPSTSFAAKFVHSSINKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF
NFEMILQAHDQPVRSMVWSNNENWMVTGDDGGAIKYWQSNMNNVKVNKTAHRESVRGLSF
SRTDLKFCSCSDDRTVKVWDFARCQEEKSLTGHGWDVKSVDWHPTKSLLVSGGKDYLVKL
WDARSGRELNSFHGHKNIVHCVKWNQNGNWVLTASKDQIIKLYDIRSMKELESFRGHTKD
VTALAWHPFHEEYFVSGSFDGAIFHWLVGHEAPQVEISNAHDNSVWDLAWHPVGYLLCSG
GNDHATKFWCRNRPGDLTRDRYSSGQTQGYGDQHSTFGARAMGGFQMPEPPTPGPFAPGL
SRNEGTIPGIGVAMTLDGSDQGEQRPSIPGLPPGQPPLPPGPHPSLLGQQQQYQQMPQQQ
HTQFHRPPPPNMPQLQPPAHMLSHSQGSRPTLPQLPPMGGPSMPSPVNPPLPPMPHPTAM
QGSQSQMMPQMPQHMMGLNQMHPGSVPPGNVPPMGGFPSGMGNIQGASGSSGIQNFPMGG
IYNRPQGQMAPQGQMTSIPGLSSYQGMGNVGLTPPPPPTQHPPPRGSTPQ
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagcaacagcagcagcagcagcagctgccacctccgccgcagcaccagccgccc
cagggcggcggcggcggggagttctaccgcggaccgccgatgcggcagctatcggcggcg
tcctcgaccaacctcacccctgagtacgcggcgcacccgggtcccccgccgccgcagcag
catcagccgccctacgatgcttatggtgataattttggtgctaaaaggatgcggaagcct
gtccagcgacgaacagtggactacacaagcagtgttgtccgttatgttcaagctcgcatg
tggcagcgggacgcgagggacagattcacattgcagccaactccagctgctgtcctagat
atgttaccatctgttgcttatccggacaatccctccacaagttttgctgccaaatttgta
cattcttcaatcaataagaaccggtgctctatcaatcgtgtcttgtggacccctacaggc
cgtcggcttatcactggatcacaaagcggtgaatttacgctatggaatggtcaatctttt
aactttgaaatgatacttcaggctcatgatcaacctgtgagatccatggtttggagtaac
aatgaaaattggatggttacgggtgatgatggtggcgcaatcaaatattggcaaagtaac
atgaacaacgtcaaagtgaataaaacagctcacagagaatcggttcgtggtttaagcttt
tctagaacagacttgaagttctgctcctgctccgatgacagaaccgttaaggtttgggat
tttgcgagatgccaagaggaaaaatcattaactggccacggttgggatgttaaaagtgtc
gattggcatcctacaaagtctttattggtttcaggtggtaaagactatctcgtgaaactt
tgggatgcaagaagtggtagagagctaaattcattccatggtcacaaaaatattgtacat
tgtgtaaagtggaatcagaatgggaactgggtactgacggcctcaaaggatcagatcatt
aagctgtatgatattagatccatgaaagagcttgaatcctttcgcgggcacaccaaggac
gtaactgctttggcatggcatccatttcatgaagaatattttgttagtgggagctttgat
ggagcaatatttcattggttggttggtcatgaagctccacaggtcgaaattagcaatgca
catgacaatagtgtgtgggatcttgcctggcatcctgtaggctacctactttgcagtggg
ggcaatgatcatgctacaaagttctggtgtagaaacaggcctggtgatcttacccgcgat
agatacagcagtggccagacacaaggttatggtgaccaacattctacttttggtgctcgt
gctatgggtggattccagatgcctgaacctccaactcctggaccgtttgctcctggattg
tcacgtaatgaaggcacaatccctggcattggggttgcaatgaccttggatggatctgat
caaggagagcagaggccatctattccgggtcttccacctgggcaacctccgctgccacca
ggtcctcatccatcacttcttgggcagcagcaacaataccaacagatgcctcagcagcaa
catacccagtttcatcggccaccacctccaaatatgccccaattgcagccaccagctcat
atgctttcacattcacaaggatctcgacctacactgccccagcttccaccgatgggtgga
ccatcaatgccatcaccagtgaatccaccacttccaccaatgcctcacccaacggcgatg
caaggttcacagagccagatgatgccccaaatgccacagcacatgatgggcctaaatcag
atgcatcctggttctgttcctcctggcaatgtacctccaatgggtgggttcccaagtggg
atgggaaacatccaaggagcatcaggttcgtctggcatacagaattttcctatgggtggc
atctacaaccggcctcagggacaaatggctccacaaggacaaatgacatccattccaggt
ctaagctcttatcagggaatgggcaatgttggccttacaccacccccgccaccaacacag
cacccgccgcctcgaggttcgacaccacagtga
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