Panicum hallii (Hall's panicgrass): 112894216
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Entry
112894216 CDS
T07366
Name
(RefSeq) nuclear pore complex protein NUP62 isoform X1
KO
K14306
nuclear pore complex protein Nup62
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112894216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112894216
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112894216
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nsp1_C
Nucleoporin_FG
Flagellar_rod
CUX1_N
HEF_HK
COG3_N
Motif
Other DBs
NCBI-GeneID:
112894216
NCBI-ProteinID:
XP_025817634
LinkDB
All DBs
Position
5:5167999..5173418
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AA seq
757 aa
AA seq
DB search
MATSFGFGSSAAAGSTASSPFSFSSTPSAFSFSQPPAASSPAPAFGSSLFSSSSAAASSA
PTFGSSLFGASSAAAPASTAASSPFGFGSTGFSFGQSTAAASSAAPAPSLFGQTAAASPA
GTTPSLFGAATSAASSPGLFGAASAPASSPGLFGASAAGSVTTTPGLFGATTSAATTPGL
FGATSAAATTPNLFGATSAAATTPSLFGAASSAASTPSLFSGASTGFSFGSSASGSTTTT
AAASAPSFGFSFSSGAAASSTASTAASSPALGFGGATGSSLFGSTTSAPLFSTTTASSPA
PAATTTPSFGFSASPATVSAPSFGFTPSTASSATGNTAASLFSSASTAPAFAFAKSTSAT
PTTSVSSPATSLSLATSQASPAPSLFSNTTAAGSSSATTSGFSFGSSSSASTPTIASVSA
TGASTAPSATSASATSGSLFPAASTSGFSFSVAPSSAAAAAATATTTTVTSASTSAGMTT
TSPLTGTTGFPSFNLQTTTPASTSSSTLSLAASTSATTTSTSQATSSAVQASSTGPATTT
AITPAVSQAPKLPSEIVGKSVEEIIRDWNNELQDRTAKFRKHATAIAEWDKRILQNRNVL
IKLEAEVAKVVETQTSLERQLELIETHQREVDNALQGMEEEAERIFQDERVLLRGDEAAS
ARDTMYEQAEVVEHELQHMTEQVKSIIQSMNATQGGELEASDSMTPFDVAVRILDNQLRS
LMWIDEKVNEFSGRIQRLPNNSASAERDSGIPRFWLS
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atggcgacctccttcggtttcggcagctccgcggccgcgggctccaccgcctcctccccc
ttctccttctcctccaccccatccgccttctccttctcccagccgccggcggcctcctcc
cccgcccccgccttcggctcctcgctcttttcctcatcctccgccgccgcttcctctgcc
cccactttcggctcctccctgttcggggcctcgtccgccgccgcgcccgcctccactgca
gcctcctccccttttggcttcggatccaccggattctcgttcgggcaatccaccgcagcc
gcttcatcggccgcgcccgccccatcccttttcgggcaaacggccgccgcatcccccgcc
ggaacaacccctagcttattcggcgctgccacctccgccgcaagcagccccggcctcttc
ggcgctgcctctgccccagcaagcagcccgggcctcttcggcgcgtccgccgccggctct
gtgacgactaccccgggcctattcggcgctaccacctccgcggcaactactccgggccta
tttggggccacctccgccgcggcgaccacaccgaacttattcggggccacttccgccgct
gcgacgacacctagtctgtttggcgccgcctcctccgctgcgtccacgccaagtctcttt
tctggagcctccacgggcttcagctttggctcgtcggcgtccggctccaccactaccacg
gccgccgcctctgcaccatcattcggcttctcgttcagctcgggggcggccgcgtcgagc
actgcttccaccgcggcatcatcaccggctttagggtttggaggcgccactggctcgtcg
ctgttcggatccaccacctctgcgccactcttcagtaccaccaccgcctcttctccagcg
cctgctgcaaccaccacgccatcctttggcttctctgcctcgccagcaacagtatccgcc
ccgtcctttggttttacgccgtcaacagcaagctcggcgacggggaacacggctgcttcc
ttgttctcttctgcttccacggcccctgcctttgctttcgctaagagcacgtccgccacg
cctaccacttcggtgtcctcgcccgccaccagcctctccttggctacttcgcaggcttca
cctgcaccctcgctgttctctaataccactgcagcaggtagttcatctgccactacgtct
ggcttctcctttggttcatcttcgtcagcttctacaccaactatagcttctgtctctgca
actggtgcatccactgcgccatcagctacttcagcttctgcaacatcgggatcattgttc
cctgctgcttctaccagcggtttcagtttttcagtagcaccatcatcagcagcagcagcg
gcagcaacagccactaccaccactgtcacaagtgcatctacatctgcaggcatgactacc
acatctcctttgactgggacaacagggtttcctagttttaatcttcaaacaaccacacca
gcttctacctcatcttcgacactgtcacttgctgctagcacatcagccaccaccaccagc
acaagccaggcaacttcctcagctgttcaagctagcagcacaggtcctgctactactaca
gctatcactccagcagtttcccaagcacctaagcttccatcagaaattgttggcaaaagt
gtcgaggagattattagggactggaacaatgagcttcaagaccgtactgcgaagttcagg
aaacatgccactgcaatagctgaatgggacaagagaattctgcaaaacagaaatgttctt
atcaagcttgaggctgaagtggctaaagttgttgaaacacaaacaagcttggagcgtcaa
cttgagttgatagaaactcatcagcgagaggtagacaacgctctacagggtatggaggag
gaagctgaacgcatattccaggatgaacgcgtgttacttcgtggagatgaggctgcttca
gcaagagatacaatgtatgagcaagcagaagttgtggaacatgaattgcaacatatgaca
gaacaagtaaaatccatcattcagtctatgaatgctactcagggtggtgagcttgaggcc
tctgatagtatgacaccatttgatgttgctgtccggatactggataatcaactgcggtcc
ctgatgtggattgatgagaaggttaacgagttctctggcagaatacagaggctgcccaac
aacagcgcttcagctgaacgtgactccgggattcccaggttttggttaagctga
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