Panicum hallii (Hall's panicgrass): 112894908
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Entry
112894908 CDS
T07366
Name
(RefSeq) transcription initiation factor TFIID subunit 6
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112894908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112894908
03036 Chromosome and associated proteins [BR:
phai03036
]
112894908
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112894908
Coactivators
SAGA/TFTC/STAGA complex
112894908
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
112894908
STAGA complex
112894908
TFTC complex
112894908
SAGA complex
112894908
SLIK complex
112894908
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
TFIID-31kDa
Motif
Other DBs
NCBI-GeneID:
112894908
NCBI-ProteinID:
XP_025818537
LinkDB
All DBs
Position
5:24186022..24191380
Genome browser
AA seq
540 aa
AA seq
DB search
MSIVPKETIEVIAQSVGIPSLGADVAAALAPDVEYRLREIMQESIKCMRHAKRTVLTADD
VDSALSLRNVEPVYGFASGDPLRFKRAVGHKDLFYLDDREVDFKEIIEARLPKAPLDTAV
VAHWLAIEGVQPAIPENPPIDAIVPPAENKRSEHGKDDGFPVDVKLPVKHVLSRELQMYF
DKIAELTMSRSDTPLFKEALVSLAKDSGLHPLVPYFSYFIADEVTRSLGDLPVLFALMRV
VRSLLHNPHIHIEPYLHQLMPSMITCIVAKRLGHRLSDNHWELRDFSANLVALVCRRFGH
VYHNLQNRLTKTLVHAFLDPAKSLTQHYGAVQGISALGPSAIRLLLLPNLVTYMQLLEPE
LHLEKQKNEMKRKEAWRVYGALLCAAGKCLYDRLKLFPVLLSPSTRPLLRSDKRVLTNNP
NKRKSSIDLSASQPPLKKMAPDTSINSMAGNMQGAMDGFSTQLGNPSMMQASSSGQMVES
IPLAAIRRDQGSDLAQRVSTVLRQAWKEDQDAGHLLGSLYEVFGEAIFSFVQPPEISLFV
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcgtgccgaaggagacgatcgaggtcattgcccagagtgtcggcatccccagc
ctcggcgccgatgtggccgccgccctcgcccccgacgtcgagtaccgcctccgcgagatc
atgcaggagtccattaaatgtatgcggcatgcaaaacggacagttctgactgcagatgat
gttgacagtgctctcagcctaaggaatgttgagcctgtatatggattcgcttctggtgat
ccattgcggtttaagagagctgttggacataaggatctcttttatcttgatgaccgggag
gtagacttcaaagagattattgaagctcgtctgcctaaggcccctcttgacacagcagtt
gtagcccattggctagcgattgagggggtgcagcctgcaattccggagaatcctcctatt
gatgcaattgtaccaccagctgaaaataaaaggtctgaacatgggaaggatgacgggttt
ccggttgatgttaagcttcctgttaagcatgtattatctagagaactacagatgtacttt
gataaaatagctgagcttactatgagtagatctgatacgcccctttttaaagaagcttta
gtgagcttggcaaaagattcaggccttcatccgttggttccttatttttcctacttcatc
gcagatgaggttacccggagtttgggtgatcttcctgttttatttgctctaatgcgagta
gtccggagtcttctccataatccacacattcatattgaaccttatttgcaccagttgatg
ccatcaatgatcacttgcattgtcgcaaaaaggctagggcataggctctctgataaccac
tgggaacttagagacttctctgccaatttggttgctttggtatgccggaggtttggtcat
gtctatcacaaccttcaaaaccggttaacaaaaacattggtccatgcatttcttgatcct
gcgaaatcattgacccaacattatggtgctgttcaagggatatctgcattggggcccagt
gcgattaggctgctgcttttgcccaacctcgtgacctatatgcaacttctggagccagaa
ctgcaccttgagaagcagaaaaatgagatgaaaaggaaggaagcctggcgtgtttatggc
gccttgctgtgtgctgcaggcaaatgcttgtacgatcggctcaaattatttcctgttttg
ctttctccatcgacacgtcctcttctgaggagtgataaaagggttttaaccaataaccca
aataagcggaaatccagcatagatctctctgcatcccagcctcctttgaagaagatggca
ccggacacatcaatcaactccatggcaggaaacatgcaaggagccatggatggcttttcc
actcagttgggcaaccccagcatgatgcaagcttcatcctctggacagatggttgagagc
atccccttagctgcgatccggagagatcagggcagtgatcttgcgcagagagtgtccacg
gtgctgaggcaagcttggaaggaggatcaggatgctggtcatctcctgggttctctgtat
gaggtcttcggtgaagccatcttctcctttgtccaaccaccggagatatccttgtttgtg
tag
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