Panicum hallii (Hall's panicgrass): 112895510
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Entry
112895510 CDS
T07366
Name
(RefSeq) transcription initiation factor TFIID subunit 12-like
KO
K03126
transcription initiation factor TFIID subunit 12
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112895510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112895510
03036 Chromosome and associated proteins [BR:
phai03036
]
112895510
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112895510
Coactivators
SAGA/TFTC/STAGA complex
112895510
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
112895510
STAGA complex
112895510
TFTC complex
112895510
SAGA complex
112895510
SLIK complex
112895510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIID_20kDa
CBFD_NFYB_HMF
Histone
Piezo_TM25-28
Motif
Other DBs
NCBI-GeneID:
112895510
NCBI-ProteinID:
XP_025819247
LinkDB
All DBs
Position
5:5086235..5091203
Genome browser
AA seq
509 aa
AA seq
DB search
MDAPPPSQPDAAAAAAAPPSSTSASAPSPAPPSNPPSSAASAAPSSDSTITTPTPTPSPG
TAANPAQTLEAPAPSPAAARPPPPRMRPPYTHLASPITMSSSSSAATAATSSSASVPPSS
SAAPPMPRAGLVLGVPAPRPAQTPAGYTGFVPPPPLAHQFGSMHRDPDQPPPSSSQFRQP
SPGIQNIGMVGSLSASQMRPGIITGLQQTRPGLASSATPIPSGSQMSGSQRTPSHALMRP
MSVGSPSPSPASQQTPQNSSSAFRPQQRPQVPQPRPQQSAPVIPHQQNVISAQQQQQLPH
NQILQQQQQQKQQQQSSSHQIQQNPTPKNQPQHSQQQAARTPVTMTQKPDLPAIQNATVL
QSVDTAAIDADASETGTRLLTKRSIHELVAQIDPNEKLDPEVEDVLMDIAEDFVESVTTF
ACSLAKHRKSNTLEAKDVLLHAERSWNITLPGFSGDEIKLYKKQHINDIHRERLALIKKS
MVTDTRNSAAQAAANQKNQTPKPPAPVSP
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgcctccaccctcgcagccggacgccgccgccgcggcggcggcgccgccctcc
tcgacctcagcttctgctccctctccggcgccaccatctaacccaccgtcatccgccgct
tctgcagcaccctcttccgactccaccatcaccacccctacccctaccccaagcccaggt
accgcagcaaaccccgctcaaaccctagaggccccagcccccagccccgcggccgcgcgg
ccaccgccgccgcgaatgaggccgccgtacacccatctggcctcgccaatcacgatgtcc
tcgtcctcctctgctgccacagctgcgacctcctcctccgcttccgttccgccgtcttcc
tccgcggcaccccctatgccaagggcagggcttgttttgggggtgcctgcgccgcgtccc
gcacagacgcccgctggttacaccgggttcgtgccaccgcctccgcttgctcaccagttt
ggatcgatgcatcgcgaccccgaccagccaccgccgtcatcttcacagtttaggcagcct
tcccctgggattcaaaatattgggatggttggatccctaagcgcatcccagatgagacca
ggaataataaccggtttgcagcagacaagacctggccttgcatcatcagcaactccgatt
ccatctggtagtcaaatgtcaggttcacaaagaaccccctcccatgctttaatgaggccg
atgtctgtgggttctccgtctccttcccctgcgtcacagcaaactccacaaaactcatct
tcagcatttaggccacaacagaggccacaagttccacaaccaagaccacaacaatctgcg
cctgtgattccgcatcaacagaatgtaatttcagcacagcagcagcagcaactaccccac
aatcaaattttgcagcagcagcagcaacagaagcaacagcaacaaagttcctcgcatcaa
attcaacaaaatccaacacccaaaaaccagccacagcattcgcagcagcaagctgctcgt
accccagtgacaatgacacagaagcctgatttgcctgctatacaaaatgctactgttttg
caatctgtcgatacagccgcaatcgatgcggatgctagtgaaactggtactcgactactc
accaagagaagcatacatgaattagttgcccagattgatcctaacgaaaagctggatcct
gaagttgaagatgttcttatggacattgccgaagattttgttgagtctgtcactacattt
gcttgttcgttagcaaagcataggaagtcaaacaccctagaagccaaagatgtactcctc
catgcagaaagaagttggaatatcaccttgccaggcttcagtggggatgaaatcaaacta
tacaagaaacagcacataaatgacattcacagggagaggcttgctctgatcaagaagtca
atggtgactgacacaagaaactctgctgcccaagctgcagctaaccagaaaaatcagact
ccgaaaccacctgccccagtgtccccatga
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