Panicum hallii (Hall's panicgrass): 112895739
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Entry
112895739 CDS
T07366
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112895739
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phai03041
]
112895739
03009 Ribosome biogenesis [BR:
phai03009
]
112895739
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112895739
Spliceosome [BR:
phai03041
]
Complex A
U1 snRNP components
U1 related factors
112895739
Complex B
112895739
Ribosome biogenesis [BR:
phai03009
]
Eukaryotic type
Pre-60S particles
Helicases
112895739
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
112895739
NCBI-ProteinID:
XP_025819517
LinkDB
All DBs
Position
5:19945212..19950300
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AA seq
814 aa
AA seq
DB search
MSGGTGSSGRAAPRYAPDDPSLPKPWRGLVDGTTGYLYYWNPETNVTQYEKPMPPDNQLP
PPPPPLPPPPPRSRDRRERSRSRSRTPPRRDHRDRDRDRDRRHDEHASSKSAASHHHPAP
AAAAVPDDPSTEAYRRRHEITVTGDNVPAPITSFEAGGFPSEILKEIQRAGFASPTPIQA
QSWPIAMQSQDVVAIAKTGSGKTLGYLLPGFMHIKRLQNSTRNGPTVLVLAPTRELATQI
LDEAVKFGRSARISCTCLYGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMRRVSLKQVT
YLVLDEADRMLDMGFEPQIRKIVKEMPHHRQTLMYTATWPKEVRRIADDLLVNPVQVTIG
SVDELVANSAITQHVEVITPSEKLRRLEQILRSQDSGSKVLIFCTTKRMCDQLARTLTRQ
FGASAIHGDKSQSEREKVLNQFRSGRSPILVATDVAARGLDIKDIRVVINYDFPTGVEDY
VHRIGRTGRAGATGVAYTFFCDQDSKYASDLIKILEGANQKVPRDLEDMASRGGGRGRKR
NRWASRSDRGGSRSELDSRYSGRDASGRSPRGSRGRDDYGGRGRYDGETDGRSRRSARGR
SRSRSRSDSRSRSPSPKRSRRHEATRSRTKSRSRSRTKSRSRSRSRSRSRSYTRNRRASR
SRSRSPVAASRRHEKTATVSGSARPNSGHTEHKSPPRSHSGNDHANHSDHKDDHHMEDGK
MEKVDLDRSPSPQDDKSAPYSPVYNGKASGSMSPNGQPVVDAKSVEASEKPDPASPVRNS
KSRDDEEEGIIDEDGEIAEDDPRSNAAATQNGDN
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcgggactggctcgtccgggcgcgcggccccgcggtacgcgccggacgacccg
tcgctgcccaagccttggcgcggcctcgtcgacggcaccaccggctacctctactactgg
aacccggagaccaacgtcacgcagtacgagaagcccatgccccccgataaccagctcccg
ccgcccccgcccccgctgcctcccccgcctccccggagccgcgaccgccgcgagaggtcc
agatcccgctcccgcaccccgcctcggcgcgaccacagggaccgcgaccgtgaccgcgac
aggcgccacgacgagcacgcgtcctccaagtcggcggcttcccaccaccatcctgctccg
gccgccgccgccgtacccgatgatccgtccaccgaggcttaccgccgccgccacgagatc
accgtcacgggggataacgtgccggctcctataacttcatttgaggctggtggatttccg
tcagaaattctgaaggagatacaacgtgctggatttgcaagcccaacacctatccaggcc
cagtcatggccaattgccatgcagagtcaagatgtagtagctatcgcgaagactggatct
ggcaaaactcttgggtatctacttcctggatttatgcatattaagcgcctgcagaacagc
acaaggaatggtccaacagtgctagttttggcaccaacaagggaacttgcaacacagatt
ctggatgaagctgtgaaatttgggagatcagcgagaatttcttgcacgtgcctatatggt
ggtgctcctaaaggtcctcagttgagagatttagatagaggagttgatgttgttgttgca
acacctggaaggttaaatgacattctagaaatgcgaagggtaagccttaagcaagtgacg
tatcttgttctggatgaggctgaccgcatgctggacatgggttttgaaccacaaatacgg
aagatagtgaaagagatgcctcaccatcgtcaaacccttatgtacactgctacttggcca
aaggaagtccgaaggattgcagatgatcttcttgttaaccctgtccaggtgacgattgga
agtgttgatgaacttgttgctaatagtgctattactcagcatgtggaggtgataactccc
tcagaaaagcttcgacgtctggaacaaatattgcgatcccaggattcgggttcaaaagta
ttaatattttgtaccaccaagaggatgtgcgaccaacttgcaaggacactcaccaggcag
tttggagcttcggccattcacggtgacaagtcccaaagtgaaagagagaaggttctgaat
cagtttcgatctggacggtctcctattttggttgcaacggatgttgctgcgcggggtttg
gacatcaaagatatcagggttgtgatcaactatgacttccccactggtgttgaagactat
gttcataggattggcaggacaggaagggctggagccactggtgtagcatatacatttttc
tgtgatcaggactcaaaatatgcttctgaccttatcaaaattctggaaggggcaaaccaa
aaggtaccccgagatttagaggacatggcttctcgtggtggtgggcgaggtaggaagagg
aaccgttgggcatcccgctctgacaggggtggttctcgttccgaactggattctaggtac
agtggtagagatgcttctgggagatcaccacgtggcagccgtggaagggatgattatggt
ggccgtggcaggtatgatggtgaaacggatgggcgatctcgcaggtctgctaggggtcgc
agtagaagccgtagcagaagtgacagtagaagccgcagcccaagtcctaagaggtcacgg
cgtcatgaggctacccgtagcaggaccaagagtcgtagccgaagcaggacaaagagtcgg
agcaggagcaggagcaggagcaggagcaggagctatactagaaaccgccgtgctagccgc
agcaggagccgtagccctgttgctgctagccgtaggcatgagaaaacagccactgtctct
gggtctgctcggcctaactcagggcacacagagcacaaaagccctccaagatcgcattct
gggaatgaccatgcgaaccactctgaccacaaggatgaccatcacatggaagatgggaag
atggaaaaggttgatcttgatcgctcacccagcccacaagatgacaaatctgctccatat
agtcctgtgtacaatggcaaagccagtggttcgatgagccccaacggtcagccagtggtt
gatgccaaatctgttgaagcttctgaaaaacctgaccctgcatctcctgtgcgcaacagc
aagagccgagacgatgaagaggaaggtatcatagatgaggatggagagatagctgaggat
gatcctcgatcaaatgctgcagctacacagaatggtgataactga
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