Panicum hallii (Hall's panicgrass): 112896555
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Entry
112896555 CDS
T07366
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112896555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phai03041
]
112896555
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112896555
Spliceosome [BR:
phai03041
]
Complex A
U2 snRNP components
U2 related factors
112896555
Complex B
112896555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
KH-I_KHDC4-BBP
Tet_JBP
Motif
Other DBs
NCBI-GeneID:
112896555
NCBI-ProteinID:
XP_025820356
LinkDB
All DBs
Position
6:complement(3002855..3007296)
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AA seq
1068 aa
AA seq
DB search
MGSGDDERSSSKHHHRDKDKDRERERSSSRHHRDKDRDRDRDRERERSSSRHHRDDGDRD
RDRDRHREKDRDREERKEREREERKAREREEREKERAREEKEKEKERARRREERDREERD
RSSRRRGDADGEDDEDRDRDRKRRRRSSHHHHRDAEPEAAPPREEEAVDDEEAERRRQRK
KEEDMEAEQRRLDDEMERRRRRVKEWQEKRREQEQDGGGAGGASAVAAAEADGTKEGKKW
TLDGEESDEEGDNEGSRKAEENGGSGNMDVDLPNGGGDANGGAGMEEDEIDPLDAFMNSM
VLPEVAKLESAAAAVDTAPAAGVDDKDGKSTKDAVSNGDKKGPRRAMGRIMQGDDSESDY
DDADDEGAGEEDEDDEEFIKRVKKTKAEKLAIVDHSKIDYQPFRKNFYIEVKDITRMTSE
EVVAYRKELELKVHGKDVPKPIKTWVQSGMTSKLLDTIKKLGFEKPMPIQAQALPVIMSG
RDCIGIAKTGSGKTLAFVLPMLRHVKDQPPVVPGDGPIGLIMAPTRELVVQIHSDIKKFS
KVLGISCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMD
EADRMFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILARKVLTKPVEIQVGGRSVV
NKDITQLVEVRPDIDRFFRLLELLGEWYVKGKILVFVHSQDKCDSLLKDLFQHGYPCLSL
HGGKDQTDRESTIVDFKSNVCSLLIATSVAARGLDVKELELVVNYDVPNHYEDYVHRVGR
TGRAGRKGFAVTFISEEEERYAPDLVKALELSQQAVPEDLKALADRFMAKVKQGTEQAHG
TGYGGSGFKFNEEEDEARKTAKKAQAREYGYEEDKSDSDSDEEGGVRKAGGDLAAQAIAN
AHAAAALVANKASSNANQQVPGTTAVPLIPLLAATNQQNDEATARALQAAMNLQQNLARI
QAHAVPEHYEAELEINDFPQNARWKITHKETLAPIQDWTGAAITTRGTYIPQGKIVGANE
RKLYLFIEGPTESSVKKAKAELKRVLEDCANQALNLPGSAQTGKYSVV
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgggctccggcgacgacgagcgctccagctccaagcaccaccaccgcgacaaggacaag
gaccgcgagcgcgagcgctcctcctcccgccaccaccgcgacaaggaccgggaccgggac
cgggaccgcgagcgcgagcgctcgtcctcgcggcaccaccgcgacgacggcgaccgggac
cgggaccgcgaccgccaccgggagaaggaccgggatcgcgaggagcggaaggagcgggag
cgggaggagcgcaaggcgcgggagcgggaggagcgggagaaggagcgggcgcgggaggag
aaggagaaggagaaggagcgggcgcggcggcgcgaggagagggaccgcgaggagcgggac
cggtcgtccaggcggcgcggggacgcggacggcgaggacgacgaggaccgcgaccgcgac
cgcaagcgccgccgccggtcctcgcaccaccaccaccgcgatgcggagccggaggcggcg
ccgccacgggaggaggaggcggtggacgacgaggaggcggagcggcggcggcagcggaag
aaggaggaggacatggaggccgaacagcggcggctggatgacgagatggagcgccgccgc
cggcgcgtcaaggagtggcaggagaagcgccgcgagcaggagcaggacgggggtggcgct
ggcggcgcttccgctgtggctgcagccgaggctgatggcaccaaggaggggaagaaatgg
accttggatggggaggagtctgatgaggaaggggataatgagggctccaggaaggcagag
gagaacggaggatctggtaacatggatgtggatttgccgaatgggggtggcgatgccaac
ggcggtgctggtatggaggaggatgagattgatccgcttgatgccttcatgaactccatg
gtgctgccggaggttgcgaagctggagagtgctgcggcagcagtggatactgcccctgcc
gcaggtgtggatgataaggatggtaagagcacaaaggatgctgttagtaatggggataaa
aaggggccaaggagagctatggggaggattatgcaaggggatgattcagagtcggattat
gatgatgctgatgatgagggggccggagaggaggatgaggatgatgaggagttcataaag
cgtgtcaagaagacaaaggcagagaagctggcaattgttgatcattcgaagattgactac
caaccattccggaagaatttctatattgaggtgaaggacattaccaggatgacatctgag
gaagtggtggcctacaggaaggagttggagctcaaggtgcatggaaaagatgttcccaaa
ccaataaagacatgggtgcagagtgggatgacaagcaagctccttgacaccatcaagaag
cttggttttgagaaaccaatgcctatacaggcacaagcactgccggtcatcatgagtgga
cgtgattgtataggaattgcaaagactggatctggaaagactctagcatttgtcctcccc
atgctgaggcatgtgaaagaccagccacctgttgttcctggagatggccctattggcctt
attatggctcccaccagagagcttgtggtgcagatacattcagacattaagaagttttct
aaggtgctcggcatcagctgtgttgcaatctatggaggttcgggggttgcacagcagatt
agcgaattgaagaggggtgctgaaattgttgtttgtacaccaggaaggatgattgatatc
ctttgcactagcagcggaaaaataaccaacctccgcagagttaccttcttagtgatggat
gaagctgataggatgtttgatatgggttttgagcctcagattactcggattgttcagaac
acccggccagataggcagacagtacttttctctgccacatttccacggcaggtggagata
ctggcacgcaaggtgctaactaagcccgttgaaattcaggtgggtgggagaagtgttgtg
aacaaagatatcacacaactggttgaggtgcgaccagacattgacaggttcttcaggctg
ttagagttgcttggtgaatggtatgttaaggggaaaattcttgtttttgttcactcgcaa
gataaatgtgattccctactcaaagacctgttccagcatgggtatccatgtctgtctctt
catggcggtaaagatcaaactgaccgtgaatcaactattgttgatttcaagagcaatgtc
tgcagcttactgattgctacaagtgttgctgctaggggtttagatgtgaaagaacttgag
ctggttgtcaattatgatgtccctaaccattatgaggactatgttcatcgtgttgggcga
acagggcgtgctggtagaaaaggttttgctgtgacttttatttctgaggaagaggagcgg
tatgcaccagaccttgttaaggccctggagctctctcaacaagctgttccagaagatctg
aaagctctagctgatcggtttatggcaaaggtgaagcagggcacagagcaggctcatggt
acaggttacggtggtagtggtttcaagttcaatgaggaagaggatgaagcacgaaagact
gcaaagaaggctcaggcaagggaatatgggtatgaagaggacaagtcagattctgattct
gatgaggaaggcggagtgcgtaaggctggaggtgacctggcagcacaagctattgccaat
gctcatgcagctgctgctttggttgcaaataaggcttctagtaatgctaaccagcaagta
ccaggaaccacggcagtccccttgattcctttacttgctgcaactaaccaacaaaatgat
gaagccacagctcgtgcacttcaggctgcaatgaacttacagcaaaatctggcgaggata
caggcccatgcagttccagaacactacgaggctgaacttgagattaatgatttcccacag
aatgcccgctggaagatcactcacaaagagacattggctcctatacaggactggactggt
gctgctatcactacaaggggaacatatattcctcaaggaaaaattgttggtgcaaatgag
cgcaagctgtacctgtttattgagggcccgacagagtcatctgtgaagaaggcgaaagca
gaattgaaacgtgtccttgaggattgtgccaaccaagctctgaatcttcctggatctgct
caaactggaaagtattctgttgtttga
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integrated database retrieval system
