Panicum hallii (Hall's panicgrass): 112896626
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Entry
112896626 CDS
T07366
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112896626
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112896626
03019 Messenger RNA biogenesis [BR:
phai03019
]
112896626
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112896626
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
112896626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf-C2H2_2
Motif
Other DBs
NCBI-GeneID:
112896626
NCBI-ProteinID:
XP_025820442
LinkDB
All DBs
Position
6:complement(4252927..4261323)
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AA seq
962 aa
AA seq
DB search
MAGAPAAGQVVERFRARLREEAGGEPGAAAVVRVYAEALRELTFNCKPVITELTIIAGQH
AALAARGIADAVCARVAEVPPDQILPSLYLLDSIVKNIGREYIDHFAVRLQKVFVDAYCR
VHPSQYASMRRLFRTWWSVFPSSVLRGIEDDLQFSPSEDKRPAIVTNPHQSESLSPRPSH
GIHVNPKYLEAQQKLKQANVQTHQPAVRGTRQMADLEEDLMNGLTSNGLRGRPSSMLQKS
TVQYADDPDQQETFRSIAGIRATSPHLLSTHPSDVILDGPLATSRRNLSRSPPLDVFPRN
VSPKRAIERMPPSHSVLGPDPRRLPDRNGRSRWTFDDGAQRPTISMLDEEYRKQSARELI
DAYGNCQGRDADERVPKMQRLDSNGMASKSSARNWLTSEEEEYSWEDMSPTLTDRVRSSM
PSFTPGTMRAGFPGANAGLLESDTGRHNFPSQSHRSSIDGPPLNLEDRITSANHVDMSTS
RRYPSNYGVQNGAHLEFQISEHTLNHGRTATMQTPPWQQPTGLPLRVQALEHPSVVDRIP
LPADSEMPVKRLEISGTYNALGVDIPLVEKHRPLTAPAPIEWPPLRHTQSQTLLPIPPDT
KHVRNAADSLEIRPFVSQGASSSVFVPQHHYDALDRKTLRTGSLAQPPYQHQDLLPSSQQ
NQGTILGNQAQPHHPQQFHPHPNPHHQEAFRSFAPGMSVSQFAGQGGTAAMPPVSLLPSS
FSVPPAVPPYGMPSVPSFPRPPLPPGPPPASLQIGSSSSQVGSAQPFVSGLLSNLMRQGV
ITLETPGRPQDSIGVDFNVDLKVRNEPVINALYQDLSRQCKTCGLRFKCQEEHRAHMDWH
VTKNRNSKNRKQSSRKYFVTAEEWLRAAETVGNDGVPAFVPSDPVPDRKEEKEMAVPADE
EQTACALCKEPFEDFYSDETEEWMYKGAVYMNAPDGNIDGLERSQLGPIVHAKCRSAPSN
TS
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggcccccgcggcgggccaggtcgtggagcggttccgcgcgcggctgcgcgag
gaggcgggcggcgagccgggtgccgccgcggtggtgcgcgtgtacgcggaggcgctccgg
gagcttaccttcaactgcaagccggtcatcaccgagctcaccatcatcgcggggcagcac
gccgcgctcgccgccaggggcatcgccgacgccgtctgcgcccgcgtcgccgaggtgcca
cctgaccagatattaccatctttgtatctgctagatagtattgtgaagaacataggacgg
gaatatatagaccattttgctgttaggttgcagaaggtatttgttgatgcatactgcaga
gttcatcccagtcagtatgcttcaatgcggcgcctctttcgtacatggtggtcagtgttt
ccttcttctgtgcttcgtggcatcgaggatgaccttcaattttctccctcagaggataag
cgtcctgccatagtgacaaatccacatcaatcagagtcactatctcctaggccgtctcat
ggcatacatgtaaatcccaagtatctggaagcacaacaaaaattgaaacaggccaatgtg
cagacacatcaaccagcagttcgtggcacgaggcaaatggctgatttggaggaggatctg
atgaatggattaacatcaaatggtttgcgagggcgtccgtcttcaatgcttcagaaatct
actgtgcagtatgctgatgatcctgatcaacaagagacatttcgttctattgctggaata
agggcaacatcaccacatctgttgagcacacatccatccgatgtcattctagatgggcca
ttagccacttcaaggagaaacttgtccaggtcgccacctcttgatgtgttccctaggaat
gtgtctcccaagagagcgatagagaggatgccaccatctcattctgtattgggacctgac
cccagaagattgcctgatcggaatggcaggtcgagatggacttttgacgatggtgcacag
cggccgacaatcagcatgcttgatgaagagtacaggaagcaaagtgcaagagaacttatt
gatgcctatgggaattgtcaaggccgagatgctgatgaaagagttcctaaaatgcagcgc
ctggattcaaatgggatggctagcaaatctagtgcacgaaattggctcacttcagaggaa
gaagagtattcttgggaggatatgagtccaactttgactgatcgagtcagaagcagcatg
ccgtcctttactcctggaaccatgagagctggatttcctggggcaaatgcaggattactg
gaatctgatactgggaggcacaattttccaagccaatctcatcgatcatcgattgatgga
ccaccattaaatctcgaagataggattacttctgccaatcatgttgatatgtctactagt
aggagatatccaagcaattatggtgttcagaatggagctcatttggagttccagatttct
gagcataccctcaatcacgggagaactgctaccatgcaaactccaccttggcagcagcct
actggtctgccattgcgagtacaagcacttgaacatccatcagtagttgatagaatacca
ctgcctgctgatagtgaaatgccagttaagagattggagattagtggtacatacaatgct
ttgggtgtagatatacccttggtggagaagcacaggccgctaactgctcctgctccgata
gaatggcctcctcttcgtcatactcagtcgcaaactttactaccgattccacccgataca
aaacatgttagaaatgcagcagatagtctagaaattaggccatttgttagtcaaggagcc
agttcatctgtatttgttccacagcatcattatgatgccttggatcggaaaacactacgt
actggtagcttagctcaaccaccatatcagcaccaagatttgttgccatcaagtcaacaa
aatcaaggtacaattttgggaaaccaagctcagcctcatcatcctcaacaattccatccc
catcccaatcctcaccatcaggaggcttttagaagctttgcccctggcatgtctgtatcc
cagttcgcagggcaaggaggtactgcagcgatgccaccagtttcacttctgccaagttcc
ttttctgtaccacctgctgtgccaccctatggcatgccatctgtgcccagttttcctagg
ccaccattacctcctggaccaccacctgcttcactgcagattggttcatcatcgtcacaa
gttggtagcgctcaaccatttgtctccggactattgagtaaccttatgcggcaaggtgta
attacattggaaacacctggccgacctcaggattcaattggagttgacttcaatgtagac
ctcaaggtacgaaacgagcctgtcatcaatgctttgtatcaggatctttcaaggcagtgc
aaaacttgtggccttcggttcaaatgccaagaggagcatcgtgctcacatggactggcat
gttacaaaaaatagaaattcaaagaaccgtaagcaatcttcacgtaaatattttgtcacg
gcggaggaatggttaagagcagcagaaacagttggaaacgacggtgtccctgcttttgta
ccctcagacccagtcccagacagaaaggaagagaaagaaatggctgttcctgcggatgag
gagcaaacagcctgtgcattatgtaaagaaccatttgaagatttctacagtgatgagact
gaagagtggatgtacaaaggtgcagtttacatgaatgcaccagatggtaatatcgatggt
ctggaaaggtcacagttgggacctattgtccatgctaaatgtcgatctgcgcccagcaat
acttcttag
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