KEGG   Panicum hallii (Hall's panicgrass): 112897465
Entry
112897465         CDS       T07366                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
phai  Panicum hallii (Hall's panicgrass)
Pathway
phai03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:phai00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    112897465
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:phai03021]
    112897465
Enzymes [BR:phai01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     112897465
Transcription machinery [BR:phai03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     112897465
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5 CFAP410_C
Other DBs
NCBI-GeneID: 112897465
NCBI-ProteinID: XP_025821550
LinkDB
Position
6:complement(3582885..3590472)
AA seq 1298 aa
MGKSQANGDQSPDVSDSDMMDFLNLDGDGEGDCDSPRKDSTKGERQPAVDADVDQSVMDV
DFEGLSSVVDEGKENQSVMDVNFEGIPSVEDEGKEKQSAMDVELKGMLSVEDEEKQEEST
MDVDFTGTPAVEDEGKGKVSLGLRTQVPVDFNVASLEKFCKEASRSFFSENGLVSHQINS
YNDFVSQGLQELIDSIGEITVEPDYDPSNRDGARKYATIKFGKVTLEEPVFMVENNDLAV
QDLKLKPRHARLQKMTYSSRMNVEMTVQVYTLEKSDKAKTGKDMHVSRRDIMKETKQVSI
GMLPVMVKSNLCWLHKLRESDCQFDSGGYFLIKGTEKVFIAEEQKCLSRIWITDRSCLEA
SYISVIKREKIYVKLVQSKRNESRKVINISFLGAIMPIWVVFFALGVSSDKEAFDMIDIL
DCDASVFNIISSTVKESHEECEGFRTPGRARQYVDKLIRKTKFPPEEAFDEYVCKYMFPG
VNGIRCKAIFLGYMVKCLLMAYSGNRKCDNKDDFRNKRLDLACQLLRRELWVHVMFAQRR
MVKLMQKDLSSDGNLQDLRRYIDASIVTNGLNRAFSTGSWRHPYKSERCSGVVATLRRAN
PLQMMSDLRKTRQWFAYSGTTGDARYPNPSYWGKLCFLSTPDGEKCGFVKNLAVTAMVST
VVKKPLIDTFVSCGMKKLDDKITLQDISGKDRIFLNGNLLGVCADPGELISRLRSLRRSK
QIEPQVEIKRDRHNKEVRVFSDPGRILRPLLVVENLRRITRPKGGLYSFQELMDQNIIEL
IGAEEEEDIRCAPGIRHLFTREKEEGPSDYTHCELDPSFLLGLSCSLIPFANHNNAKRVL
MQAEKLSQQAIGYSPLNSRSRFDSLSHQIFYPQRPLFKTVVADCLGKADYNFGRKDDFTP
TEYFNGQNAIVSVNFHQGFNQEDSLVLNRASLERGMFRTLHFKSYKAQVENKEITRRLKH
KEKLSFGKVQSKKGKVDSLDNEGLPYVGASLQSGDIVIGKVTESGEDLSAKLMHTEKGMV
EKVVLSANDDGMNFATVTLRQSRSPCVGDKFASMHGQKGVVGLLDSQENFPFTRQGIVPD
IIINPNSFPTRQTPGQLLEAALGKGIALGGKVGYATPFTTPSVDVITEQLHKAGFSRWGG
ESVLNGHTGERMKSLVFIGPIFYQRLTHMSEDKVKFRNTGPVHPLTRQPVEDKKRFGGVK
FGEMERDCLLGHGAAASLHERLFMLSDFSQMHICQACERVANVIMRPEYGGKKVRGPYCL
FCRSAERIVRINVPYGAKLLYQELFSMGICLKFQTEVH
NT seq 3897 nt   +upstreamnt  +downstreamnt
atggggaaatcgcaagcgaatggtgatcagtcacctgatgtctcagattctgacatgatg
gatttccttaatttggatggcgatggagaaggtgactgtgactcccccagaaaggacagc
acaaaaggggagcggcagcctgctgttgatgctgatgtagatcagtctgttatggatgta
gattttgaaggcctgtcatccgtggtagatgaagggaaagaaaatcaatctgttatggat
gtaaattttgaagggataccatctgtggaagatgaaggcaaagagaagcagtctgctatg
gatgtggaattgaaaggaatgctatctgtggaagatgaagagaaacaagaggagtctact
atggatgtggattttacaggaacaccagctgtggaagatgaaggcaaaggaaaggtgtct
ttgggcctacgcacgcaagtccctgttgacttcaatgttgcaagcctggagaagttttgc
aaggaagcatcaagatcattcttcagtgagaatggactagttagccatcagataaattcg
tacaatgattttgtctctcaagggctccaggagctcattgattctattggggaaattact
gtggagcctgattatgacccttcaaatagagatggtgctcggaaatatgcaactataaaa
tttggtaaagttacacttgaggagccagtgttcatggttgaaaacaatgatcttgctgtg
caagatctcaagttgaagcctagacatgctcgcctccagaagatgacatattcgtccagg
atgaatgtagaaatgactgttcaggtttatacactcgaaaaaagtgacaaagccaaaact
ggtaaggatatgcatgtttctagaagggatataatgaaagaaactaaacaggtcagcatt
ggaatgttacctgtcatggtgaagtcgaatttgtgctggctgcataaacttcgggaaagt
gactgccagtttgattctggtggctactttttgatcaaagggacggaaaaggtattcatt
gctgaagagcagaaatgtttatccaggatttggatcacggatcgttcctgcttggaagca
agctacataagtgtaatcaaacgagaaaagatctatgtaaaacttgttcagtctaaaagg
aatgaaagccgcaaagtcatcaacatttccttcctgggtgcaattatgccaatctgggta
gtgttttttgcactaggtgtatcgtcagataaggaagcttttgatatgattgatatacta
gactgtgatgcttctgttttcaacataatatcatcaactgtgaaagaatctcatgaagaa
tgtgaaggcttccgcactccaggtagagctcgtcaatatgttgataagctgatcagaaaa
acaaagtttccgcctgaagaagcctttgatgagtatgtttgtaagtatatgtttcctggt
gtcaatgggattaggtgcaaggcaattttcctgggttacatggtcaaatgcctgctaatg
gcttactctgggaatcgaaaatgtgataataaggatgatttccgtaacaagaggctagat
cttgcctgccagttgcttcggagagaactctgggtgcatgttatgtttgcacaaagacgc
atggttaagctcatgcaaaaagatttgagctctgatggaaacttacaagatcttaggcgt
tacatagatgcatcaattgttaccaatggtttgaaccgggccttctccactggttcctgg
cggcatccttataaatcagaaaggtgttcaggggttgtagcaacccttcggagagcaaat
ccacttcaaatgatgtctgacttgaggaagactcgacagtggtttgcgtactctggaaca
actggggatgcaagatacccgaatccatcttactggggaaaattatgttttctgtccacc
cctgatggtgaaaaatgtggattcgtgaaaaaccttgctgttacggctatggttagcact
gtggtgaagaaaccgctgattgatacatttgtttcttgtggaatgaagaaactggatgat
aaaattactctacaagatatttctgggaaagacaggattttcttgaatgggaacctgctt
ggagtgtgtgcagacccaggcgaattgatttcacgtttaagaagcttgaggcgtagcaag
caaattgagccacaggttgaaatcaaaagggacaggcacaataaagaagttcgtgtattt
tctgatccggggagaattctaagaccacttcttgtagttgaaaatctaagaagaatcaca
agaccaaaaggtggattgtactcatttcaggaacttatggatcaaaacataattgaacta
attggtgctgaagaagaggaggatatccgatgtgctcctggaattaggcatctattcaca
agggagaaagaagaggggccttctgattatactcattgtgaacttgatccttctttcttg
ctagggttgagttgcagtctcattccctttgccaaccataataacgctaagagggttctg
atgcaagctgaaaaattatcacagcaggctattggctactcccctttaaactcacgctct
agatttgatagcctctcacatcaaatcttctatccacagagacccttgtttaaaactgtg
gtggccgactgtcttggaaaggcagactacaactttggacgaaaagatgacttcactcca
acagaatatttcaatggccaaaatgcaatagtctccgtcaactttcatcagggatttaac
caagaagattctctagttttgaatagggcctctctagagcgtggcatgtttcgtacacta
catttcaagagctataaagcccaggtcgaaaacaaagagatcaccagacgactcaaacac
aaggaaaagctcagttttggtaaagtgcaaagcaagaaggggaaggttgacagtctggac
aatgagggtttaccatatgttggagcaagtcttcaaagcggtgacattgtgattgggaag
gtcacggaatctggcgaagatcttagtgctaaactgatgcatactgagaaagggatggta
gagaaggtagttctttcagcaaatgatgatgggatgaactttgcaactgttactctaaga
caatctcgctcgccatgtgtcggagacaagtttgccagcatgcatgggcagaaaggagtg
gttggccttttggattctcaggagaactttccatttactcgccaagggatagttccggac
atcatcataaacccaaacagctttccaactcgtcaaactcctggtcagttgcttgaagct
gctttggggaaggggattgccctgggtgggaaggtgggatacgcgacaccattcaccact
ccatctgtggatgtgatcaccgaacagttacacaaggccggtttttcaaggtggggtggg
gagagcgtcctgaacgggcacactggtgagcggatgaagtcgctggtcttcatcggcccg
atcttctaccagcggctgacccacatgtccgaggacaaggtgaagttccgcaacacgggg
cccgtgcacccgctcacgcggcagccggtggaggacaagaagcggttcggtggcgtcaag
ttcggggagatggagcgagactgcctcctcggccatggcgctgctgccagcctccatgag
cgcctgttcatgctaagcgatttctcgcagatgcacatctgtcaggcctgcgagcgcgtg
gccaacgtgatcatgcgccccgaatatggtggcaagaaggtgcgcggcccctactgcctc
ttctgccggtccgcagagcgcatcgtccggatcaatgtgccttatggagccaagcttctg
taccaggagctcttcagcatgggcatctgcctcaaattccagaccgaggtccactag

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