Panicum hallii (Hall's panicgrass): 112897796
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Entry
112897796 CDS
T07366
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03022
Basal transcription factors
phai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112897796
09124 Replication and repair
03420 Nucleotide excision repair
112897796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112897796
03400 DNA repair and recombination proteins [BR:
phai03400
]
112897796
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
112897796
DNA repair and recombination proteins [BR:
phai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
112897796
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
112897796
NCBI-ProteinID:
XP_025821975
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Position
6:complement(2617371..2625528)
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AA seq
600 aa
AA seq
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MGSMTIGAKYKTTLKDPGTPGVLRMNDDRLTFTPNDPRSAMKLNVDFRSIKGHKFNKVDG
NKPALLNLSKDSDKGGGYMFEFDNVGNRDLCRDFVARVLGKHQGVVPPRPTAAPENSVAS
AGLEQLSAAEVERRVKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDQANKASKQ
RPGFKTAMSDVRPSADGRTNKVTFNLTTEMIHQIFAEKPAVRRAFLDFVPKKLTDKEFWT
KYCRAEYLLRTKNTAAATAEAAEDEELAVFLKNDDILAKEAKLKIKQVDPTLDMEADAGD
DYIHLPDHGILRDGSKETLDTDSELAKRTLSQDLNRHAAVVLEGIASDVELTDAKSVAEA
LARSKKEPPSTSVDDSSHERLVKVARMTEIEDLQAPRSVPYAPLCIKDPREYFDSQQANA
LRSLGGSNDGRKARSCSLSTEEAFHHLTDQISSIKVNKLNYPVIQSDMALKVLNELNEGI
SRSRRLNLKNPQEGLLGRVPQHTQDELMDHWTAIQELLRHFWSSYPITNAVLYNKVQRVK
DAMTQIYQKLQAIKESAQPDVRHEISRLVKPMTQALDAAFSHDLEQQQKSAKAGNKPNGF
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggggtcgatgacgatcggcgccaagtacaagaccacgctcaaggaccccggcaccccg
ggcgtcctccgcatgaacgacgataggctcactttcacccctaatgatccgcgctcggca
atgaagctcaatgttgatttccgaagcattaaaggtcacaagttcaacaaagtagatggt
aacaaaccagcattattgaatctttcaaaagattctgacaagggtggaggctacatgttt
gagtttgacaatgttggtaaccgtgacctatgtcgagactttgtagctagggttttaggc
aaacatcaaggggtagtgcccccccgaccaactgcggctcctgaaaactcagttgcttct
gctggtcttgaacagctcagtgctgctgaagtggaacggcgggtgaaactgttgcgagaa
gacagtgaattgcagaaattacataagaagtttgttcttggaaatattctgcaagaatct
gaattttgggcaacaagaaagaatttgcttgatgatcaagcaaataaagcatctaaacaa
aggccaggcttcaagactgcgatgtcagatgttaggccatcagctgatggtcggacaaac
aaggttactttcaatctcacaaccgagatgatacatcagatttttgcagaaaaacctgct
gttcgtcgagcatttttagattttgttcccaaaaagttgacagataaagaattttggaca
aaatactgtagagctgagtatctgcttaggacaaaaaacactgcggcagcaacagctgag
gctgctgaagatgaggaattagctgtcttcctgaagaatgatgatatactggccaaggag
gcaaagttgaagataaaacaagttgatccaacgttagacatggaggcagatgctggagat
gattacatccatcttccggatcatgggattctccgtgatggtagcaaagagacacttgac
actgacagtgagttggcaaagaggacactgtctcaggacctgaatcgtcatgcagctgtt
gttcttgaagggatagcttcagatgtggagctgactgatgcaaagagtgtagcggaagcc
cttgcaaggtccaagaaggaaccaccctccacttctgttgatgattctagccatgagaga
ctggtgaaggtggccagaatgacggagatagaggatctgcaagctccgcgaagcgttccg
tatgcaccactttgtataaaggatcctagggagtattttgattcccaacaagcaaatgct
ctcagatcgttaggtggcagcaatgatggaagaaaagcccgtagttgcagcttgagcact
gaagaagcgttccatcatttaacggatcaaatatcttctattaaagttaataagttgaac
tatccagttattcagtcagatatggctcttaaggttcttaatgagttgaacgaagggatt
tcacgttcaaggagacttaacctcaagaaccctcaagagggtctccttggtcgggtgcct
caacacacgcaggacgagcttatggatcactggacggctatccaggaattgctacgccat
ttttggtcatcatatccaataacaaatgcagtcctttataataaggttcaaagagttaaa
gatgcaatgacacagatatatcaaaagctgcaggctataaaggaatcagcgcagcctgat
gtaaggcatgagatatctcggctagtaaaaccaatgactcaggccttggacgctgccttc
agccatgatctggagcagcagcagaaatcggcgaaggccgggaacaaacccaacggattt
tga
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