Panicum hallii (Hall's panicgrass): 112898464
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Entry
112898464 CDS
T07366
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai00040
Pentose and glucuronate interconversions
phai01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112898464
Enzymes [BR:
phai01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112898464
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
DUF2917
Motif
Other DBs
NCBI-GeneID:
112898464
NCBI-ProteinID:
XP_025822578
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All DBs
Position
6:15562982..15564284
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AA seq
317 aa
AA seq
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MRQNRGPGVIAYMVTDPGDDPVRPRPGTLRYGATVLAGKVWITFQRGMHIRLAQPLFVKS
FTAIDGRGADVHIAGGAGIMLYQVNNVIIQGLHIHDCRSQSAGQVVVPGGAVQLAGGMDG
DAIRLVSSTKVWIDHNTLSRCEDGLLDVTVGSTDVTVSNNWFFNHDKVMLLGHDDGHAAD
RRMRVTVAFNRFGPNVNQRMPRIRHGYAHVVNNLYDGWGHYAIGGSMGPSVKSQGNMFVA
SGPDNKKVTRRMPAGGKDWDWASIGDSFQNGAFFKQTGSRVRPNYNKHQAFVAASANEVR
LLTKDAGALSCSAGSAC
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgcggcagaaccgaggccccggggtgatcgcgtacatggtcaccgaccccggcgacgac
ccggtgcgcccacgtccgggcaccctgcgctacggcgcgacggtgctggccgggaaggtc
tggatcaccttccagaggggcatgcatatcaggctggcgcagccgctcttcgtcaagagc
tttacggccatcgacgggcgcggggccgacgtgcacatcgcgggcggcgcaggcatcatg
ctctaccaggtgaacaacgtgatcatccaggggctgcacatccacgactgccggtcgcag
tccgcggggcaggtggtcgtccccggcggcgcggtgcagctcgctggtggcatggacggc
gacgccatccggttggtgtccagcaccaaggtctggatcgaccacaacaccctgtcccgg
tgcgaggacgggctcctggacgtcacggtaggctccacggacgtgaccgtctccaacaac
tggttctttaaccacgacaaggtcatgctgctcggccacgacgacggccacgccgccgac
cgccggatgcgggtcaccgtcgcgttcaaccgcttcggccccaacgtcaaccagcgcatg
ccaaggattaggcacggctacgctcacgtagtcaacaacttgtacgatggatggggacac
tatgccattggaggaagcatgggtcccagcgtcaagagccaaggcaacatgttcgtagcc
tcggggccagacaacaagaaggtgacgcgaaggatgccggccgggggaaaggattgggat
tgggcctccatcggcgactccttccagaatggtgccttcttcaagcaaacgggcagcagg
gtgcggccgaactacaacaagcaccaggccttcgtggcggccagcgccaacgaagtaagg
ttgctgaccaaggacgccggcgctctcagctgcagtgctgggtccgcgtgctga
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