KEGG   Panicum hallii (Hall's panicgrass): 112898612
Entry
112898612         CDS       T07366                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like isoform X1
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
phai  Panicum hallii (Hall's panicgrass)
Brite
KEGG Orthology (KO) [BR:phai00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:phai03009]
    112898612
Ribosome biogenesis [BR:phai03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    112898612
SSDB
Motif
Pfam: Beta-prop_WDR3_1st WD40 Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_NOL10_N Beta-prop_TEP1_C NBCH_WD40 Beta-prop_EML Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR41 Beta-prop_VPS8 ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd DSE1_N WD40_Gbeta WD40_MABP1-WDR62_2nd Beta-prop_DCAF4 Beta-prop_SCAP ASA1 Beta-prop_IP5PC_F Beta-prop_Vps41 WD40_MABP1-WDR62_1st Beta-prop_CAF1B_HIR1 PAC11 Beta-prop_HPS5 Beta-prop_LRRK2 CFAP251_N Beta-prop_ACSF4 WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_RIG_2nd WDR54 Beta-prop_Aladin
Other DBs
NCBI-GeneID: 112898612
NCBI-ProteinID: XP_025822750
LinkDB
Position
6:14753052..14758609
AA seq 427 aa
MAPPPPKQLVLAASSADAGVAAWDLRTGAEEIRHRPCASRPRALASVADRFLAAAQAPPA
GGNSGTVHFYHWDKPQVAVKSFPAEPIRALLADQEGSYLIGGGSNGNLFLWEVASGELLH
TWHAHYRAVRCLALYDYLLVSGSEDGSVKVWDLITVLDEQSRLEAQTPYLYSFNQHALPV
TDIACFLGAIAVSSSEDRTCKIWSLSEGRMLRSIPFPSSIDSVALDPRSHVFYAGGRDGK
IYVTAMGVDISSHGGDESSILGALDDQSKAVTSLASSTDGLVLVSGSEDGNVRVWDTRSQ
QVTRKFKHSQGPVTNVLIVAPKRVNLPPLHPLRKVCSANGEVEPRAVILPRPENDVPIHG
NRTSIFMEHYLDELQKYGGSSMLFDSGLNTQNCAANQQGTEWRGRYLELQDLFVHEVLDQ
MPSSRNP
NT seq 1284 nt   +upstreamnt  +downstreamnt
atggcgccgccgccgccgaaacagcttgtgttggccgcgtcctccgcggacgccggtgtg
gccgcctgggacctccgcaccggcgcggaggaaatccgccaccgcccctgcgcctcccgc
cctcgcgcgctcgcctcggtcgccgaccgcttcctcgccgctgcacaggcccctcccgct
ggcggaaactccggcaccgtccacttctaccactgggacaagccgcaggtggccgtcaag
agcttccccgctgagccgatacgcgctcttcttgcggaccaggaggggagctacctcatt
ggcggtggcagcaatggcaacttattcctttgggaggtggctagtggagagcttctccac
acatggcatgcgcactatcgtgctgttaggtgcctcgcgctttatgactatctgcttgtc
tcaggatcagaagatggaagcgtcaaagtttgggatctgatcacggtgcttgatgagcag
tcaaggttggaggcccagacaccatacctctacagtttcaatcagcatgcactgcctgta
actgatattgcttgtttccttggagcaattgctgtatcttcttcagaagatcgaacctgc
aaaatctggagtttatctgagggtaggatgctaagaagcattccattccctagtagcatt
gattctgtagcactagacccaagaagtcatgttttctatgctggtggtagagatggaaag
atatatgttactgctatgggtgttgatatcagttctcatggtggtgatgagtcatctatt
cttggcgctttggatgaccaaagcaaggcagtaacaagcttggcatcaagcacagatgga
cttgtactagtttctggatctgaggatggtaatgttcgggtgtgggatactagaagtcag
caagtaacccgaaaattcaaacactcccaaggtccagtaaccaatgttctgatagtagcg
ccaaaacgagtaaacctgcccccactgcacccattgcgtaaagtttgctcagcaaatggt
gaagttgaaccacgtgctgtaattctgcctcggcctgaaaatgatgttcctattcatgga
aatcgaacctcaatttttatggagcactacttggatgaacttcagaagtatggtggttct
tccatgctatttgattctggtctgaacactcagaattgcgcagcgaaccaacaagggaca
gaatggagaggtagatacttggagttgcaggatctctttgtgcatgaggtcctcgatcag
atgccgtcctctaggaacccatga

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