Panicum hallii (Hall's panicgrass): 112898800
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Entry
112898800 CDS
T07366
Name
(RefSeq) exosome complex component RRP4 homolog isoform X1
KO
K03679
exosome complex component RRP4
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112898800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112898800
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
112898800
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
112898800
BRITE hierarchy
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GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
TIP49
Motif
Other DBs
NCBI-GeneID:
112898800
NCBI-ProteinID:
XP_025822878
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All DBs
Position
7:complement(39776789..39780578)
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AA seq
319 aa
AA seq
DB search
MRDLHLSLNQTQRVRLEAALHELQSLAPAAASAAAVTVADTIPVNQEDNILKGHGTSDQD
GEVVATLCGVVERVNKLVYVRTLRARYKPEVGDIIVGRVIEIAPKRWRLEINFSQDAVLM
LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGSLHLQARSEKYGKLERG
RLLTVPPYLVKRKKQHFHHLAQYDVDLILGCNGFIWVGEHVVVGKKTKTTEDQQKSSDDA
ENFTPLETRKHICRLANAVRVLSALGFTLTVELIIETAEASASSNVEVNNMLGAEFYVQT
AEREAKRRADLLRKKNGAR
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgagggacctccacctctcgctgaaccagacccagcgggtccgcctcgaggcggcgctc
cacgagctccagtccctcgcgcccgccgccgcgtccgccgccgccgtcaccgtcgcggac
accatccccgtcaaccaggaggacaacatcctcaaggggcacgggacgtcggaccaggac
ggggaggtggtggcgacgctctgcggggtggtggagcgggtcaacaagctggtatacgtc
cgtactctccgggcgagatataagccagaggttggtgatatcatagttgggcgtgtcatt
gagattgctccgaagcgctggaggttggagataaattttagtcaggatgctgtgttgatg
ctttcttccatgaatttgcctgatggcattcagagaaggagaactgctgttgatgaactt
aatatgcggagtatctttgaggaaaatgatgtgatctgtgctgaagttcgtggtttccaa
catgatggatctctgcacctacaagcaaggagtgaaaagtatggaaagcttgagaggggt
cgattgctgacggtacctccgtacttggttaaacgaaagaagcagcatttccatcatctc
gcacagtatgatgttgatttgattcttggttgcaacggattcatctgggtaggtgagcat
gttgtggtgggtaaaaaaactaaaacaaccgaagatcagcagaaatccagcgatgatgca
gagaatttcaccccactggaaacgcggaagcatatctgccgacttgccaacgccgtgcgt
gtactttcagccctaggattcactttgactgttgagctgataatcgagacagcggaagca
agtgcgtcatcgaatgttgaggtaaacaacatgcttggggctgaattttatgtccagacg
gctgagagagaggctaagcgccgagctgatctgctgagaaaaaagaatggggcaaggtaa
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