Panicum hallii (Hall's panicgrass): 112899059
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Entry
112899059 CDS
T07366
Name
(RefSeq) nuclear pore complex protein NUP88
KO
K14318
nuclear pore complex protein Nup88
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112899059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112899059
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112899059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup88
Snapin_Pallidin
NTNH_C
Motif
Other DBs
NCBI-GeneID:
112899059
NCBI-ProteinID:
XP_025823174
LinkDB
All DBs
Position
7:43823473..43829238
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AA seq
853 aa
AA seq
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MTRITAPPPPSSPPGSPPPIRHSPAPETPLSRRRGRHSPSPSLALTPSSSASTSAATSSR
PKLRPTPKRAYAPSQWVPLSSHPDFFRRDGEGGGGAAAWDATASRLYAWDPSACGAHRIG
VRIRDPEAENEGEEVAVEAAVPSEMLMPETDLGYVVTHVSLNTDGSSLLLVGSHNLSVLY
VHERVSEDGDTIICRIALIASQILPSNNDGIKVLQASWHPFSNNHFAVLTSDAVFRLFDL
SSDLEQPEQEFYLQPILPGKCQNALAICPVAFSYGSDHLWDRFSVFILFSDGSIFVLCPV
VPFGSDYSKKHIQEIYEDVNAFGLKSSNPNVVTNSHLAIAWLEATFPDLLHQSTDTSLLM
SKAHPYAPVDDSLTLQGPLCRVCEENNESEGKSSSCEGKAVGFMYSSAGKDSVLVTAWGS
GQLQVDALADEIQPQWNIGIPTRLNVDSHGHIKSVAMICDSNSQDPLALRSHRPSSTGSN
VKSNIEAVWMGHSPPLLRLAIVDLALPKAPSDSSLSLFPDPLVPERFYCAHGGGLDMVTL
HFLPFSYPEMASTPPSVHPILTTGNSDTSSPFLSGFVTIADAYGHVQLVGITCLGECFVV
EMKGWKEPTPLQLDIDSKSIKDVEPPATGMISKELIAGPDPPILPSSSSLKSLTPDSIEG
KSTLHHYIKVFHEYYVEYGHKVFIELKEHADYVKTELEDKQKRLQAVKKSLLSIETKDQE
INKRIDRAFKVYELLEKRIDSFKMLPAANKKPLSQAEQEFKAQLDRFANVELDALRSSIA
ALSARMKRFAQQSAGGVAGTRVVPWQAPKTGRSHISESQMSLLKSSLEKLSLLNEENNLK
LRIIDNELKNKEQ
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgactcgcatcaccgcgccgccgccgccgtcctcgcccccggggtccccgccgcccatc
cgccactcgccggcaccggagaccccgctctcccgccgccgcggccgccactcgccgtcc
ccgtccctcgcgctcaccccctcctcatccgcctcgacctccgccgccacctcctcgagg
ccgaagctgcgccccacgccgaagcgggcctacgcgccgtcgcagtgggtgccactgtcc
tcgcaccccgacttcttcagacgcgacggcgagggcggcggtggcgccgccgcgtgggac
gccacagcgtcgcggctgtacgcgtgggacccttcggcgtgcggcgcccaccggataggc
gtgcggattagggacccggaggcggagaatgaaggggaggaggtcgccgtggaagccgcc
gtgccttccgagatgttgatgccagagactgatcttggttatgtggtcactcatgtgtca
ctcaacactgatggttcatcactgctacttgttggatcacataatctaagtgtcctgtat
gtacatgagagggtgtctgaagatggtgatacaatcatatgcaggattgcactaattgct
tcccagatcctacccagtaacaatgatggcataaaagttctgcaggcatcttggcatcct
tttagtaacaaccattttgcagttttgacatcagatgctgttttcaggttatttgatcta
tcatccgatttagagcagccagagcaggaattttatctgcagccaatactacctggaaaa
tgtcagaatgctttggcaatttgtccagtagcattctcttatgggagtgatcatctatgg
gacagattttcggttttcatcttattcagtgatggttcaatttttgtgctatgtcctgtt
gttccatttggaagtgactatagcaagaaacatattcaagaaatatatgaagatgttaat
gcatttggattgaaatcttcaaatccaaatgttgtcactaactcacatttggccatagct
tggttggaggcaacatttcctgacttgttacatcaatcaacagataccagcttgctgatg
tcaaaagctcatccgtatgcgcctgtagatgattctctaactttacaggggcctctttgt
agagtttgtgaggaaaacaacgaatctgaaggtaagagcagcagttgtgaaggcaaagct
gtaggttttatgtacagttctgctggcaaagattcagttcttgtgacagcatggggtagt
ggacagctccaggttgatgctcttgctgatgaaattcaaccgcagtggaacattgggatt
cctactcgccttaatgttgattcacatggacatataaagagtgttgccatgatatgtgac
tccaattcacaagatccgttggccttgagatcgcatcgaccatccagtacgggatccaat
gtgaagagcaacatagaagctgtttggatggggcattctcctcctttgctaaggctcgca
attgtggatttggcactaccaaaagctcccagtgatagctctttgtccttgtttccggat
ccccttgttccagagagattttattgtgctcatggtggggggcttgacatggtcacactg
cacttcctaccattttcataccctgaaatggcttcaacgccaccctccgtgcatcctatc
ctcacgacaggcaatagtgacacaagttctcctttcctttctggatttgttaccatagct
gatgcatatggtcatgtacagttagttggcatcacatgcctgggtgagtgctttgtggtg
gagatgaagggttggaaggaaccaacacctcttcagcttgacatagatagcaagagtatt
aaggatgtggagcctcctgcaactggaatgatcagcaaagagcttattgctggtccagac
ccacccatacttccatcttcatcaagcctgaagtcattgacccctgactctattgaagga
aaatccacacttcatcactatattaaggtcttccatgagtactatgtggagtacggacac
aaggttttcattgagctcaaggagcatgcagactatgtgaagacagaacttgaagacaaa
cagaaacgcttacaagcagtgaagaaatcacttctatccatagaaaccaaagaccaagaa
attaacaagaggatagatcgggctttcaaggtgtacgaattgttggagaagcggatagat
agcttcaagatgcttcctgctgcaaataagaaaccattatctcaggcagagcaggagttc
aaggcacagcttgataggtttgctaatgtggagcttgatgctttacgttcatctattgcc
gcccttagcgcgaggatgaagcggtttgctcagcaatccgcgggaggtgtagctggcaca
cgagtggtaccgtggcaggcaccaaagacgggacgaagccatatttcagaatcccagatg
tcactgctgaaatcttcactcgagaagctctcgctccttaatgaagagaacaatctgaag
cttcggataatcgataatgaactcaagaacaaggagcaatag
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