Panicum hallii (Hall's panicgrass): 112899414
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Entry
112899414 CDS
T07366
Name
(RefSeq) splicing factor-like protein 1
KO
K13095
splicing factor 1
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112899414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phai03041
]
112899414
Spliceosome [BR:
phai03041
]
Complex A
Other components
Complex A specific factors
112899414
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
RRM_1
KH_1
KH_12
zf-CCHC
RRM_5
eIF3g
RRM_10
PHD_4
KH_PNO1_2nd
DUF6319
RRM_7
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
112899414
NCBI-ProteinID:
XP_025823654
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All DBs
Position
7:32328752..32332874
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AA seq
723 aa
AA seq
DB search
MASAETLARSPSSDPPRAASSEPPRDASSEPHGSGAGDSSSRRRRRSRWEHSNDDSAANN
SGGEGGAGGRKRKTRWAEEEPRPAIALPDFMKDFAAEMDPEVHALNARLLEISRLLQSGL
PLDDRPEGARSPSPEPVYDNLGIRINTREYRARERLNRERQEIISQLIRRNPAFKPPSDY
RPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGKLLQK
RDLKPDPSENEDLHVLVEAETQDALDAAAGMVEKLLTPVDEVLNEHKRQQLRELAALNGT
IRDDEFCRTCGEPGHRQYACPNKMTTFKSDVQCKICGDGGHPTIDCPVKGMAGKKMDDEY
QNFLAELGGGSAPESMTKSGGPMLALTGSGGSSGASAGSGSNPPWSAGGGAAATGANGIK
KDYDETNLYIGYLPPTMDDAGLISLFSQFGDIVMAKVIKDRNTGHSKGYGFVKYSDVSQA
NAAIAAMNGHHLEGRVIAVRVAGKPPQSAPPVSAPPSYPPTDPASGGYSSQSYMGAPPPP
PPPGSYAPVPWGNPPPYASYPPPPPGSSVYNPAPPAPGHTAPPPYGVQYPPPPPPPAAPI
PPPGTAPSSDAAQNYPPGITPPSSGAPTHPAPTPVYASSGTPNAPPMYPPPSYSYSPYYP
TYQPPPPPPPPAASVDPSQSIATAPWATHNAAPPPPPPLSSTTNQPASYGADAEYDKFMS
EMK
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgccgaaaccctagcacgctccccctcctccgacccgccccgcgccgcctcg
tcggagcccccgcgcgacgcctcctccgagccccacggctccggcgccggggactcctcc
tcccgccgccgtcgccgcagccgctgggagcattccaacgacgactccgccgccaacaac
tccggcggtgagggcggggccgggggccggaagcgcaagacgcggtgggccgaggaggag
ccgcgcccggccatcgcgctcccggacttcatgaaggacttcgccgccgagatggacccc
gaggtgcacgccctcaacgcgcgcctcctcgagatctcgcgcctgctgcagtcgggcctc
ccgctcgacgaccgccccgagggcgcgcgctcgccgtcgcccgagcccgtctacgacaac
ctcggcatccgcatcaacacccgcgagtaccgcgcccgggagcgcctcaaccgcgagagg
caggagatcatctcccagctcatccgccgcaaccccgccttcaagccaccgtccgactac
cgcccgcccaagctccagaagaagctctacatccctatgaaggagtacccggggtacaat
ttcattgggctcatcatcggcccgcgcggcaacacgcagaagcggatggagaaggagact
ggtgccaagatcgtcatcagggggaagggtagtgtcaaggaagggaagctgttgcagaag
agggacctcaagccggatcccagcgagaatgaggacctccatgtgcttgttgaggctgag
actcaggacgcgttggatgcggctgctgggatggtggagaagctgctgaccccagtggat
gaggtgctgaacgagcacaagcggcagcagctccgggagcttgcggcgctcaatgggaca
attagggacgatgagttttgtaggacatgtggggagcctggtcaccggcagtatgcttgc
cccaataagatgaccacgtttaagagtgatgtgcagtgcaagatctgtggtgatggtggg
cacccgacaattgattgtccggtcaagggcatggctgggaagaagatggatgatgaatac
cagaacttcctggctgagcttggtggtgggagtgcacccgagtccatgacaaaatctggt
ggtccgatgttggcccttacaggaagtggtggtagcagtggcgcttctgctggtagtggg
agtaacccgccttggtctgctggtggtggtgcggctgccactggggccaatggtatcaag
aaagactacgacgagacaaatctgtatattgggtacttaccacctacaatggatgatgca
ggcctgatcagtctgttttcacaatttggggatattgttatggctaaggtgatcaaggat
cgaaacactgggcatagcaaaggatatggatttgtcaagtattcagacgtttcacaggct
aatgcagcgattgctgcaatgaatggtcaccatctggaaggcagagttattgcagttaga
gttgcaggcaagcctccacagtcagcgccgccagtgtcagcaccaccatcatatcctcct
acagatcctgcttctggtggctattcctcccaatcctacatgggagcaccaccaccacct
cctccaccagggagttatgctccagttccatgggggaacccaccaccatatgcttcatat
cctccgccaccaccaggctctagcgtctacaatcctgcaccccctgcaccaggtcataca
gccccacctccatatggtgtgcagtatccacctccaccaccgcccccagcagctccgatc
cctccaccaggaactgctccatcaagtgatgcagctcagaattatccccctggcataaca
ccaccgagttctggtgcacccactcaccctgccccaactccagtgtatgcatcctccggc
acaccaaatgcaccaccaatgtaccctccaccatcatatagttattccccatactatcct
acatatcagccaccgcctccaccaccaccaccagcagctagtgtcgatccctctcagagt
attgcaactgcaccttgggccacccacaatgcagcaccgccaccaccgccacctttgtcc
tccaccaccaaccagccagcttcctatggtgctgatgcagagtatgacaagtttatgtca
gagatgaagtga
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