KEGG   Panicum hallii (Hall's panicgrass): 112900054
Entry
112900054         CDS       T07366                                 
Name
(RefSeq) tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1
  KO
K05544  tRNA-dihydrouridine synthase 3 [EC:1.3.1.89]
Organism
phai  Panicum hallii (Hall's panicgrass)
Brite
KEGG Orthology (KO) [BR:phai00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:phai03016]
    112900054
Enzymes [BR:phai01000]
 1. Oxidoreductases
  1.3  Acting on the CH-CH group of donors
   1.3.1  With NAD+ or NADP+ as acceptor
    1.3.1.89  tRNA-dihydrouridine47 synthase [NAD(P)+]
     112900054
Transfer RNA biogenesis [BR:phai03016]
 Eukaryotic type
  tRNA modification factors
   Dihydorouridine synthases
    112900054
SSDB
Motif
Pfam: Dus zf-CCCH_DUS3L zf-CCCH_4 zf_CCCH_4 zf-CCCH DEAD_2 zf-CCCH_2 Organ_specific
Other DBs
NCBI-GeneID: 112900054
NCBI-ProteinID: XP_025824564
LinkDB
Position
7:3380190..3395006
AA seq 711 aa
MTATAPATDPSDSSPAVTTDSPPPPRPTAEELVARAVAPVKPAFLRPPPIREVPKEEGKA
GGGGAVVTGEKKSKRQLKRERQQEQKSTSHLCIEVGKSGNVDSCKYGTSCRFSHDINAYL
AQKPGDLEGTCPFTALGHLCPYGLTCRFLGTHKDNLAPQNHSEGNHERNPLSKDIQKLLW
KNKYKFPKASAQIKLLGLKDGNKNKAKAANDDNPHEAHELNGDEKTESLSSIPANVEPDP
TLCKETDNSEGEPLVVSSVQCVEPRPLKKSKVEVDETLNDGTGIHDNEAESEDLNLINGI
KVSSNNQSSCRVDLITTPHLREKKIIDFREKLYLAPLTTVGNLPFRRLCKTLGADITCGE
MAMCTNLLQGQASEWALLRRHPSEDLFGVQICGPYPDTVARTVELVDNECSVDFIDINMG
CPIDIVVNKGAGSSLLTKPMRIKSIVQAASTVTEKPLTVKVRTAFFEGRNRADSIVSDIY
DWGASAITIHGRSRQQRYSKLADWDYIYQCAQKAPDNLHVIGNGDVFSFTDWNKHVSDCS
KISTCMIARGALIKEQDGKQIFVQQSSPNLSIPLHHNDHGKKPWLFTEIKEQRHWDITSG
ERLNILKDFVHFGLEHWGSDSKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPS
YYGRDDLETLMASDSAADWIRISEMLLGKVPEGFTFAPKHKSNAYDRAENG
NT seq 2136 nt   +upstreamnt  +downstreamnt
atgaccgcgaccgcgccggccaccgacccttcggactcctctcccgccgtcactaccgac
tctccccctcctccgcggcccaccgcggaggagctggtggcccgcgccgtcgcccccgtc
aagcccgccttcctccgcccgccgcccatccgcgaggtccccaaggaggagggtaaggct
ggcggcggcggggccgtcgtcacgggagagaaaaagtccaagcgccagctcaagcgcgag
cgccagcaggaacaaaagtctacttctcatctttgtattgaagtaggaaaaagtggaaat
gtggactcatgcaaatacggtacctcttgccgtttcagccatgacataaatgcttatctg
gctcagaaaccaggtgaccttgaaggaacatgcccatttaccgcattggggcacttgtgt
ccatatggattaacttgtcggttccttggtacacataaggataaccttgctcctcaaaat
cattcagaggggaaccatgagagaaatcctttgagcaaagatattcagaagctcttatgg
aagaacaaatataaatttcctaaggccagtgcccagatcaaacttcttggtcttaaggat
ggaaacaagaataaagctaaagcagcaaatgatgataatccacatgaggcacacgagcta
aatggcgatgaaaaaactgaatctctttctagcattcctgcgaatgttgaacctgatccc
actttgtgcaaagaaacagataattcagagggagaacctttggttgttagctcagttcaa
tgtgtggagccaaggccgttaaagaaatcaaaggttgaagttgatgaaactctgaatgat
gggactggtattcacgacaatgaggcagaatctgaagatcttaatttaatcaatggaata
aaagtttcctcaaataaccaaagttcctgcagagttgacttgatcacaacacctcattta
cgtgaaaagaaaattatagattttcgagagaagctttaccttgctcccttgaccactgtc
gggaaccttccttttcggaggctctgtaaaaccttgggagctgatattacctgtggagaa
atggcgatgtgcacaaatcttttacaggggcaagcttcagagtgggctttgctacgacgt
catccatcagaggatttgtttggggtgcaaatctgtggaccgtatccagatacggtagca
cgaacggttgaacttgtggataatgaatgttcagttgacttcatagacataaatatgggc
tgcccaattgatatagttgtcaacaagggtgctggatcatcattgctcacaaagcctatg
agaattaagagtattgtacaagcggcatctactgttactgaaaagccgttaactgttaag
gtaagaacagctttctttgagggcaggaatcgtgctgattctatagtttcagacatatac
gactggggtgcttcagccataacaatacatggtcgatcacggcaacaacgctacagcaaa
cttgccgattgggactatatttaccagtgtgcacagaaggcccctgataatttgcatgtc
attggaaatggcgatgtattctcctttactgactggaacaagcatgtttcggactgctcc
aaaatttccacttgcatgattgctcgaggtgctcttatcaaggaacaagatgggaagcaa
atttttgttcaacagtcatctcccaatctaagtattcctctgcatcataacgaccatgga
aagaagccttggttatttactgagataaaagaacaaaggcattgggacattacatctggt
gagagattaaatattcttaaagattttgtgcattttggtctggaacattggggctctgat
tccaaaggagtggagacaacacgccatttcttgctagaatggttaagttacacctgccgc
tacattccggttggtctgttggatgtcatccctcaacgattgaactggaggccaccaagc
tactatggccgggatgaccttgaaaccctgatggcatctgattcagcagctgactggata
aggatttctgagatgttgcttggtaaagttccggaaggatttacctttgcaccgaagcac
aagtctaatgcctatgatcgggcagaaaatggctaa

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