Panicum hallii (Hall's panicgrass): 112900249
Help
Entry
112900249 CDS
T07366
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4 isoform X1
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03022
Basal transcription factors
phai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112900249
09124 Replication and repair
03420 Nucleotide excision repair
112900249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112900249
03400 DNA repair and recombination proteins [BR:
phai03400
]
112900249
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
112900249
DNA repair and recombination proteins [BR:
phai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
112900249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
112900249
NCBI-ProteinID:
XP_025824828
LinkDB
All DBs
Position
1:complement(1567301..1571486)
Genome browser
AA seq
291 aa
AA seq
DB search
MTSAHSKLYSDDVSLVVVVVDTNPLFWAAAALPFADFFANLVHFVNSLLLLNHLNRVVVI
AAGVSSCAYIFDSNDASPSGGVGVMATFDKASRKVEEFIAQDARATAGNSSVASANAASL
LSGALSLALCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDSC
IVGTQDSAFLQQASYITRGVYLKPQELNGLFQYLAAVFATDLHSRTFLRLPKTLGVDFRA
SCFCHKKTIDMGYVCSVCLSIFCKNQKKCSTCGSEFSRVMPDLNSMPDQSK
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgacatccgctcactccaagctctactccgatgacgtcagcctcgtggtggtggtcgtc
gacacgaacccccttttctgggccgccgctgcgctccccttcgccgacttcttcgcgaat
ctggtccacttcgtgaactcgctcctacttctgaaccacctcaaccgtgtggttgtcatc
gccgcgggagtcagctcttgtgcgtacatctttgattccaatgatgccagcccctctggt
ggtgtaggtgtcatggccaccttcgacaaggcaagccgcaaggtggaggagttcattgca
caagatgcccgtgccactgcgggcaacagttccgttgcttctgcaaatgctgcgtcgctg
ctgtctggggcgctgtcccttgctttgtgttatatacagaggattttcaggtctgggact
cgacatccgcaacctcggattttgtgtctgcagggttctccagatggtcctgaacaatat
gtggcagtgatgaattcaatattttctgctcaacgttccatggttccaattgattcatgt
attgtgggaactcaagattctgctttcttgcaacaggcttcatacataacgcgaggagtt
tatttgaagccccaagagctaaatgggctgtttcagtatcttgctgctgtatttgcaact
gatttacactcaagaacgtttttgcgccttcctaagacccttggagtggactttcgtgct
tcatgtttctgccataagaagactattgacatgggatacgtttgttcagtttgtttgtca
atattctgcaagaatcagaagaagtgttcaacctgtgggtcagaattcagtcgtgtcatg
cctgatttgaattccatgccagatcaaagcaagtag
DBGET
integrated database retrieval system
