Panicum hallii (Hall's panicgrass): 112900961
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Entry
112900961 CDS
T07366
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112900961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112900961
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
112900961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Zn_ribbon_RanBP
Vps36-NZF-N
G-alpha
AAA_29
zf-Sec23_Sec24
Motif
Other DBs
NCBI-GeneID:
112900961
NCBI-ProteinID:
XP_025825528
LinkDB
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Position
7:complement(47194696..47199693)
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AA seq
732 aa
AA seq
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MVGILFLLFPRALHGWYEPRLEDTCGRSGNHRDSSATGLGIRDDNRSELEKPFTDPGMWQ
CSICTHENDTSNLSCELCGVLRDLSLYFNNISEAEAGAKRRNKYSGVSVLARSLFASSST
KSKAIIFSDGSQDNRNATGNKQATMDALHKTYMPSKKRHINIGTAMLSSSLFPFKFDTPS
PDDMVTTGLKSSRNFRKVVQIKDSVDATGKKMMDSGILQTEKDTSMDPCTSAEVDKLGGT
SSSVPSSNQQVTPILDHELQHLSLESKPKSSKPKIKKPASISEYKPEPWMLQSEDQEMRR
QLNLAIVGHVDSGKSTLCGRLLHALGLISKKQMHKYEKEAKEKGKGSFAYAWAMDDSTDE
RERGITMTVAVKYFDTEKYHVVLLDSPGHKDFVPNMISGATQADAAILVVDASVGSFEAG
MGVSGIGQTKEHSQLIRSFGVENLIVAVNKMDMVEHSKDRFNFVKLQLGIFLRSCGFKDS
SITWVPLSAMANENLVTAASDSRLLSWYNGNCLLESIDSLPPPHRDVSRPLRLPICDVIA
SITLGQVAVCGKVEAGGIRTGSKVLVMPSGDLATVKTIERDSSSCNLARAGDNIAVGLQG
VDPGHLVSGGVICHPDFPVHVASRLELKILVLEITTPILVGLQFELHIHHARVSASLVKI
LSLLDQKTGKASKKMPRLLTARQAAVVDVKLDKEVCVEEFSALKALGRAFLRSGGNTVAV
GIVTRILDEAKV
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggtaggaattttgtttctgctgtttcctcgagccttacatggttggtatgaacccaga
ctcgaagatacgtgtggaaggagtggcaaccacagagatagtagtgctactggtctgggg
ataagagatgataacaggtctgagcttgagaagccctttacagatcctgggatgtggcaa
tgctccatttgcactcatgaaaatgatacgagtaatttatcctgtgagctatgcggtgta
cttcgtgatctgtcgctgtatttcaataatatcagtgaagctgaagctggagctaaacgc
agaaacaagtattctggagtatccgtactggcaagatctctttttgcgtcatctagtacg
aaatcaaaggctattattttctctgatggctcccaagacaatagaaatgcaacagggaat
aagcaagctaccatggatgctctgcataagacatacatgcccagcaaaaagcgccacatt
aacataggtacagctatgctcagcagttctttgtttcctttcaaatttgatacgccctct
cctgatgatatggtcactacaggcttaaaatcatcaagaaattttagaaaagtggttcaa
attaaagattcagttgatgccaccggaaagaagatgatggatagtggtattcttcaaact
gaaaaggatacaagtatggatccatgtacatcagctgaggtggataaacttggcggaact
agtagcagtgttccttccagtaatcaacaagtaactcctattttggaccatgagctacag
catttgagtttggagagcaagccaaagagcagtaaacccaagattaagaaaccagcttct
atttcagagtacaagccagaaccatggatgctccagagtgaagaccaggaaatgcgtaga
cagctaaatcttgccattgtcgggcatgttgattctgggaaatcaactttatgtggtcga
ttactacatgctctgggattgatttcaaaaaagcaaatgcataaatatgagaaagaagct
aaagaaaaggggaaaggatcatttgcatatgcttgggccatggatgacagcactgatgag
agggagcgtggaattacaatgactgtggctgtaaaatattttgacactgaaaaataccat
gtagttttgctcgactcccctggtcataaagattttgttcctaacatgatatctggggct
acacaagcggatgcagccatcctagttgttgatgcatctgtaggctcatttgaagcaggt
atgggtgttagtgggattggtcagacaaaggagcactcacaacttattaggagctttggt
gttgaaaacttgatagttgctgttaataagatggatatggtagaacattcgaaggaccgg
tttaattttgttaaattgcaacttggtatcttccttcgatcatgtgggttcaaagactct
tcaatcacctgggttcctttgagtgcaatggcaaatgaaaacttagtgactgctgcttcg
gattctcgtcttttgtcatggtacaatggaaattgtctgctggaatccatcgactcattg
ccccctcctcatcgtgatgtttcaaggccactacgccttccaatctgtgatgttattgct
tctatcacactggggcaggtggcagtttgtggtaaagtggaggctggaggaatccgaact
ggttctaaggttcttgtcatgccatccggagatttagctacagttaaaaccatcgagcgg
gattcctctagttgcaacttggcaagagctggggacaacattgctgttggtttgcaaggg
gttgaccctggtcaccttgtgtcgggtggagttatatgccatccagatttccccgtacac
gttgcttctcgcttggagctgaaaattttggttctagaaatcactacaccaatactggtt
ggcctccagtttgaactgcacatacatcatgcgagggtgtctgcaagcttggttaaaata
ctgtcgttgctggaccagaagaccggcaaggcctcaaagaaaatgccacgcctgctcacc
gcgaggcaggctgctgtagttgatgtaaagctggacaaggaggtctgcgtggaagagttc
tcagctctgaaggcccttggtcgagcgttcctgcggtctggtggcaacaccgttgcagtg
ggcattgtgacccgaatcctggacgaggctaaggtttag
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