Panicum hallii (Hall's panicgrass): 112901111
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Entry
112901111 CDS
T07366
Name
(RefSeq) BRCA1-associated RING domain protein 1-like isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112901111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112901111
04121 Ubiquitin system [BR:
phai04121
]
112901111
03036 Chromosome and associated proteins [BR:
phai03036
]
112901111
03400 DNA repair and recombination proteins [BR:
phai03400
]
112901111
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
112901111
Ubiquitin system [BR:
phai04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
112901111
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
112901111
DNA repair and recombination proteins [BR:
phai03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
112901111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-HC5HC2H_2
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_2
RTT107_BRCT_5
PTCB-BRCT
zf-RING_UBOX
zf-C3HC4_4
zf-RING_5
zf-RING_10
PHD_NSD
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
112901111
NCBI-ProteinID:
XP_025825729
LinkDB
All DBs
Position
7:complement(39360724..39364835)
Genome browser
AA seq
650 aa
AA seq
DB search
MESLRRFLNPLVLNLQKMELELTCPVCLKLLSAPTMLPCYHTSCSNCALTRTSNGYSCAI
CKSAYHSQDLRPASHLEAIVGIHRSLSSTVSTMVQEQDAQVHIPAAKTASHGTPESGNRS
GVEKSDHMKSYNPVASKLVYNQSTGPAFGSMDGVQPRDLAFENKAADADVAPTVLVQKGH
SGSQSSDGPGDLDCDSNDLEGELITIRSPLQTALKREANVMDDHTRELKKQKSNDQVQSK
SCFLSDLLSKSLEMQNTNVILNMNTGQTTMASAWKCEFCHSSQVTECTGPLSHYLHGEPL
QADQAWKSNVQHVHEKCIEWAPQAFFTGDIANNLEPELARASKIKCSVCGLKGAALGCLV
KSCRKSFHVPCAHRIKGCRWDEENFVMLCSTHSSKKLPCERSKSKKKAQLQQPSSDIDDL
NSPSPMQSDELWTAPPVMTSEWVICGSALSSREREILDQFEHRTGITVTNSWSSNVTHVI
ASTDERGACARTLKVLMAILAGKWVLNVNWLKACIEAREPIPEEPYEVRCDVHGSFDGPR
TGRLRAMQQAPSLFAGLTFYFSGHFMPAYKINLEDLIAAAGGSILEKSELSTTSLILYSV
EPPQGNNLDTLNEVIKKREAEAEELAATVGCKAIPHTWLLDSIASCTILS
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggagagcctgaggaggttcctgaacccgctggtgctcaacctgcagaagatggaactg
gagctcacctgccccgtctgcctgaagttgctcagcgcgcctacaatgctaccgtgctac
cacacatcctgcagcaactgtgctctcacacggacttcgaatggttatagctgtgccatt
tgcaaatcggcatatcattctcaagatttaaggccagcttctcaccttgaggcgatagtg
ggcattcacaggagcctcagctctacagtcagcaccatggttcaggaacaggatgctcaa
gttcacattcctgctgcaaagacagcatcccatggaacaccagaatcagggaatagaagt
ggggtagagaaatctgaccacatgaaatcttacaaccccgtggcttcaaagttagtatat
aaccaatcgactggacctgcgtttgggagcatggatggtgttcaaccaagagatcttgca
tttgagaacaaagctgctgatgcagatgttgcaccaactgtccttgtacaaaagggacat
tctgggtcacaatcttctgatggccctggggatttggattgtgacagcaatgatcttgaa
ggagaactgataacaatcagatcacctcttcaaactgcactgaaaagagaggcaaatgta
atggatgaccataccagagaattgaagaagcaaaaatcaaatgatcaggttcaaagtaag
agctgtttcctatctgatctcctttccaaatctttggaaatgcaaaatactaatgtgatt
ttgaacatgaatacaggacaaacaaccatggccagtgcttggaaatgtgaattttgtcat
tcttcccaagtcactgagtgtactggccctttgtcacattatctacatggggagccatta
caggctgaccaagcttggaaatcaaatgttcagcatgtccatgagaaatgcattgaatgg
gctcctcaagcattcttcactggtgatattgcaaacaacttggagcctgagttggcccgt
gcttctaagatcaagtgtagtgtttgtggcttgaaaggtgcagcacttggctgccttgtg
aagagctgccgcaagagctttcatgtcccatgtgcacacaggatcaaaggctgcagatgg
gatgaagaaaactttgttatgctgtgttctactcattcttcaaaaaagttaccctgtgag
agatcgaagtcaaaaaagaaggcccagctacagcaaccatcatctgatattgatgatctg
aattcaccttctccaatgcaaagtgatgaactttggactgccccacctgttatgactagt
gaatgggtgatatgtggatctgccctcagttcccgtgagagggaaatcttggatcaattt
gagcatcgaactggcatcacagtaactaacagttggagctcgaatgtgactcatgtgatt
gctagtactgatgaacgtggggcatgtgctaggacactcaaagttctcatggctatttta
gctgggaaatgggttctcaatgtaaattggctgaaggcctgtattgaggctagagaacca
atcccagaagagccctatgaggtcaggtgtgatgttcatggctctttcgatggccctcgc
acaggaaggcttcgagcgatgcaacaggcaccaagtctgtttgctgggttgaccttctat
ttcagtggccatttcatgccagcatacaagattaaccttgaagatttgattgctgcagca
gggggttcgattttggagaagagtgagctttctactacatccttgattctctacagtgta
gagccgccacaaggaaacaatctagacacccttaatgaggtcatcaagaagagagaagct
gaggctgaagaattggcagccacagttggctgcaaagctattcctcatacatggcttctg
gattctattgcatcctgcacaatcctcagttga
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