Panicum hallii (Hall's panicgrass): 112901170
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Entry
112901170 CDS
T07366
Name
(RefSeq) SWI/SNF complex subunit SWI3D-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112901170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112901170
03036 Chromosome and associated proteins [BR:
phai03036
]
112901170
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112901170
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112901170
PBAF complex
112901170
GBAF(ncBAF) complex
112901170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
112901170
NCBI-ProteinID:
XP_025825803
LinkDB
All DBs
Position
7:2241326..2251073
Genome browser
AA seq
904 aa
AA seq
DB search
MEPKPSPPPAATPRRRGAATKRKERAASAALSASPPPKRQARERTPVDPPPLPPPPAPRS
RPAASKSRRKSARKKAPRRSVNPPREQQPEEAQAPPPPPPQRPSLEQEIKAVLSRGPGVH
VVPTFAGWFSWKEIHPIEKQMLATFFDGKSERRTPEIYLGIRNLIMRKFHFNPEVHLECK
DLSELSIGEMDARLEILEFLAHWGLVNFHPCPPAVQDCKLVESKSSADTTEEISLIEKLF
QFETVHSYLVPVSKKAEIISPVQFTSFLSQPKLAEDAITAAESSVEYHCNSCSVDCSRKR
YHCRTQVDFDLCSECYNEGKFDEGMSKADFILMEYAEVPGSGGSNWTDQETLLLLEALQI
FQGKEWDEIAEHVATKTKEQCMLYFLQMPIFNSFLDGEDFNETPQKITEQDSAETGTLGV
PEEMDVGDNAKGKESTDEKTYKKANANSSETGTKLADQSVSAKENTMNLGDNDLVPSSIV
DESNKSSLMDPANKKKSADADVSGEHASNFVTDVLRSTFEAVGHFLGKDDLGSFAEAGNP
VMALAGFLASLVERDDAVTLCCSSLRAISAISPALQLATGHCFILPDPPNNLKDLTSNYS
PCTCGEYQGGADGTQNVNDTDKDSSKREESALALEKEDASQEHLELSNTEESFVEGPKAE
VKSNSTKDSDNQTAKVGTSVASDKMRDGCNTIPCSATSNNTNEPSSITSQEASAASTNAT
TNRERLEADKSSSKELPDDDSPSQGKVEPKEIEHAPMASSSIQQHESNQTGSGNTEEPNS
NKNIAAAAADPVIRLQRAAVTAISAAAVKAKFLVEQEEGHIRRLAELVIEKQFQKMETKM
SFLAEVENLVLRSRELTEKMRKKLMLERSAIIASRMSAAASRTNQHRAPETRLPVALVRQ
LRHP
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atggagcccaaaccctcgccgccgccggccgccacgccgcgccgccgcggggcggcgacc
aagcgcaaggagagggctgcatccgcggcactctccgcgtccccgccgccgaagcgccag
gcccgggagcgcacccccgtcgacccgccgcccctcccgccgccgcctgcaccgcgcagc
cgcccggccgccagcaagtcgcggcgcaagtccgctcggaagaaagcgccgcgccgctcc
gtgaatccgccgcgcgagcagcagccggaggaggcgcaggcgccgccgccgccgccgccg
caaaggccgtcgcttgagcaggagatcaaggccgtcctgtcccgcggccccggcgtccac
gtcgtccccaccttcgccggatggttttcatggaaggaaattcaccccattgagaagcaa
atgttggctacattttttgatgggaaatctgagagaaggacacccgagatatacttggga
attagaaatttaatcatgagaaaatttcattttaatcctgaagtgcatctggagtgcaaa
gatttgtctgagttgtcaattggggagatggatgctcgtctggaaatcttggagttcttg
gctcactggggcttggttaatttccatccttgtccaccagctgtgcaggactgcaagcta
gttgagagcaaaagtagtgctgatacaacagaggaaatttctctgattgagaagctattt
cagtttgaaacagttcattcatatctggtacctgtttcgaagaaagctgaaatcatatcc
ccagttcagtttactagcttcctttctcagcctaaactagctgaagatgcaataactgca
gctgagtcttctgttgagtatcattgcaactcctgctcagttgattgttcgagaaagcgc
tatcattgtaggactcaggtagacttcgatttgtgttctgagtgctacaatgaaggaaag
tttgatgaaggcatgtcaaaagctgatttcatccttatggaatacgcagaggttccaggc
tctggtggttctaactggactgaccaggagacattgcttcttttggaagctttgcaaatt
tttcaaggaaaagaatgggatgagattgctgagcatgttgctacaaaaacaaaagaacag
tgcatgctatacttcctccaaatgccaattttcaattcctttctagatggtgaagatttc
aatgaaacacctcagaagatcacagaacaggattcagcagaaactggcactttgggtgta
cctgaggaaatggatgtaggtgacaatgcaaaaggaaaagagagcaccgatgaaaaaact
tacaagaaagcaaatgctaattcttcagaaacaggaacaaaattagctgaccaaagtgtt
tctgctaaagagaataccatgaatttaggtgataatgatcttgttccatcttccatagtt
gatgaatcaaacaaatcttcattgatggatcctgcaaataagaaaaaatctgctgatgct
gatgtatctggggagcatgcatccaactttgttactgatgtcctgagatctacttttgaa
gctgttggccactttctgggtaaagatgacttgggttcatttgctgaagcaggaaatcct
gtgatggcactagctggatttttggcttctcttgtggaacgtgatgatgctgttacttta
tgttgtagttccttgagagctatatcagcaatatctcctgctcttcaattggcaactggg
cactgttttattcttccggatccaccgaataacctcaaagatctgacttccaattacagc
ccttgcacatgcggtgagtaccaaggaggcgctgatggtactcaaaatgttaatgatact
gataaagatagcagtaaaagggaagaaagtgctttagctctggaaaaggaggatgcctca
caggaacatctggaattatccaacacagaggagtcatttgttgaaggtcccaaagcggag
gtcaaatccaacagcacaaaggattctgataatcaaactgctaaggtggggactagtgtt
gcatccgataagatgagagatgggtgtaataccattccttgttctgctacttcaaataat
acaaatgaacctagttccataacttcccaagaagccagtgcagcaagtacaaatgccaca
accaaccgtgaacggttagaagcggacaaatcaagttctaaggaattaccagatgatgac
tcaccttcacaagggaaggtagagccaaaggagattgaacatgcacctatggcctcatct
agcatccaacaacacgagtccaaccaaactggaagtggcaacactgaagaacctaacagc
aacaaaaacattgctgctgctgctgctgatcccgtaataaggctgcagcgagctgcagtt
actgcgatttcagcagctgcagtgaaggctaagttcctcgtggagcaggaggaaggtcat
attcggcgactagctgaacttgtgatcgaaaagcagtttcagaagatggaaactaaaatg
tcatttcttgctgaagttgaaaatctggtcctgcggtcaagagaattgacagagaaaatg
cggaagaagcttatgttggagcggagtgcgataatcgcttctcgaatgtctgctgcggca
tccagaacaaaccagcatcgggctcctgagactagactgccagtagccctggttcggcag
ctgaggcacccttga
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