Panicum hallii (Hall's panicgrass): 112901235
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Entry
112901235 CDS
T07366
Name
(RefSeq) probable pectate lyase 8 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai00040
Pentose and glucuronate interconversions
phai01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112901235
Enzymes [BR:
phai01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112901235
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Peptidase_C24
Motif
Other DBs
NCBI-GeneID:
112901235
NCBI-ProteinID:
XP_025825883
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Position
7:4967546..4972962
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AA seq
463 aa
AA seq
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MTEAAACRTAGRAGLAAAALLLVLVVVAAGPSGRVLHGLRHRSAAAGGARRWLRDSSWPT
AAAATPRADGDDDGPAMAVPGAVEDPEAVVDDVHMSIRNSTARRNLGYLSCGTGNPIDDC
WRCDPDWHKNRQRLADCGIGFGRNAIGGRDGKIYVVTDPSDDDAVNPRKGTLRYAVIQDE
PLWIIFKRDMVITLKQELIMNSFKTIDGRGANVHIANGACITIQYVTNVIIHGLHIHDCK
PTGNAMVRSSPSHYGWRTIADGDAVSIFGASHIWVDHCSLANCADGLIDAIMGSTAITVS
NNYFTHHNEVMLLGHSDSYVKDKAMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHW
EMYAIGGSAEPTINSQGNRYLAPTNPFAKEVTKRVETAQTVWKSWNWRSEGDLLLNGAYF
TPSGAGASASYSRASSLGAKSSSMVGSITSDAGALSCRKGAAC
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgacggaggcggcggcgtgcaggacggcggggcgggcggggctcgcggcggcggccctg
ctgctcgtcctcgtggtggtcgccgccggccccagcggccgggtgctccacgggctccgg
caccggagcgcggcggcgggcggcgcgaggaggtggctacgggactcgtcatggccgacg
gcggcggcggcgacgccgagggccgacggcgatgacgacgggccagcgatggccgtcccc
ggcgcggtggaggacccggaagcggtggtcgacgacgtgcacatgtccatcaggaacagc
acggcccggcggaatctcgggtacctgtcgtgtgggacgggcaaccccatcgacgactgc
tggcgctgcgacccggactggcacaagaaccgccagcgcctggccgactgcggcatcggc
tttggccgcaatgccatcggtggccgcgacggcaagatctacgtcgtcactgacccgagc
gacgacgacgccgtcaacccgcgcaagggcaccctccgctacgcggtgatacaggacgag
ccgctctggatcatcttcaagcgggatatggtgatcactctcaagcaggagctcatcatg
aacagcttcaagaccatcgacggacgcggcgccaacgtgcacattgccaacggcgcctgc
atcaccatccagtacgtcaccaacgtcatcatccacgggctccacatccacgactgcaag
cccacagggaacgccatggtgcgcagctcgcccagccactacgggtggcgcaccattgcc
gacggcgacgctgtgtccatcttcggcgccagccacatttgggtggaccactgctcgctc
gccaactgcgccgacggcctgatcgatgccatcatgggatccacggctatcactgtgtcc
aacaactacttcacccaccacaacgaggtgatgcttctgggccacagtgactcctatgta
aaggacaaggcaatgcaggtgacaatagccttcaaccatttcggtgaaggcctcattcag
agaatgccaaggtgccggcatggttacttccatgtggtgaacaatgactacacccactgg
gaaatgtacgccattggcgggagcgctgagccaaccatcaacagccagggcaaccgctac
cttgctccgacaaaccccttcgccaaggaggtgaccaagagagttgaaacggctcagact
gtctggaagagctggaactggagatcagagggcgacctcctgctgaacggtgcttacttc
accccatcgggcgcaggcgcctcagccagctactcacgcgcctccagccttggcgccaag
tcatcatccatggtcggctccatcacctccgatgccggtgccctgtcctgccgcaagggt
gcggcctgctag
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