Panicum hallii (Hall's panicgrass): 112902218
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Entry
112902218 CDS
T07366
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112902218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112902218
03041 Spliceosome [BR:
phai03041
]
112902218
03009 Ribosome biogenesis [BR:
phai03009
]
112902218
03016 Transfer RNA biogenesis [BR:
phai03016
]
112902218
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112902218
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
112902218
Spliceosome [BR:
phai03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
112902218
Complex C
U4/U6.U5 tri-SnRNP related factors
112902218
Ribosome biogenesis [BR:
phai03009
]
Eukaryotic type
Pre-60S particles
Helicases
112902218
Transfer RNA biogenesis [BR:
phai03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
112902218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
112902218
NCBI-ProteinID:
XP_025826954
LinkDB
All DBs
Position
8:complement(3572349..3578819)
Genome browser
AA seq
1008 aa
AA seq
DB search
MGEEAENTSKRKAPDSSAVEEPSPPAPASTAQSQAEADPAAKRRNLSRSCIHEVAVPNGY
AAAKDEAVHGTLASPEFNGEMAKQYPFKLDPFQSVSIACLERNESVLVSAHTSAGKTVVA
EYAIAMAFRDKQRVIYTSPLKALSNQKYRELSQEFTDVGLMTGDVTLQPNATCLVMTTEI
LRAMLYRGSEVIKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATE
FAEWICSLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFGQLQDSFS
KQNNQLDGRKGGGPKASGRIAKGGSASGNSDIYRIVKMIMERKFQPVIIFSFSRRECEHH
AMSMSKLDFNTEDEKECIEQVFRNAISCLVEEDRSLPAIELMLPLLKRGIAVHHSGLLPI
IKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDTNRYIGSGEYIQMSG
RAGRRGKDERGICVIMIDEKMEMSVIKDMVLGKPAPLVSTFRLSYYTILNLMSRVEGQFT
AEHVIRNSFHQFQYEKALPEIVQKITRLENEATLLDSSGETDLAEYHKLGLDISELEKKI
MSEMIRPERALLYLVPGRLVKVRDGSTDWGWGVVVNVVKKPPASGTLPPALSAARGNSYI
VDTLLHCSSISNENGSRSKPCPPRSGEKGEMHVVPVPLPLISGLSSVRINIPPDLRPPEA
RQNILFAVQELGKRYPQGLPKLHPINDMGIQEPELVDLVHKLEELEQKLCSHRLHKSGQS
EQELSWYQRKADLNSEIQNLKSKMRDSQIQKFRDELRNRSRVLKMLGHIDGDGVLQLKGR
AACLIDTGDELLITELMFNGTFNDLDHHQVASLASCFVPCDKSSEQIRLRNELSRPMMQL
QEAARKIAEVQRECKLEVNVEEYVESTCRPYLMDVIYCWSRGATFAEVMEMTDIFEGSVI
RLARRLDEFLNQLRAAAEAVGEVNLEKKFEKASESLRRGIMFSNSLYL
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgggggaagaggcggagaacaccagcaagcgcaaggcgccggactcgagcgcggtggag
gagccgagcccgccggcgccggcgtcgacggcgcagtcgcaagcggaggcggacccggcg
gccaagcgccggaacctctcccggtcgtgcatccacgaggtcgccgtcccgaacggctac
gcggcggccaaggacgaggcggtgcacgggacgctggccagcccggagttcaacggggag
atggccaagcagtacccgttcaagctcgaccccttccagagcgtctccatcgcgtgcctg
gagcggaacgagtcggtgctcgtctccgcgcacacctccgcggggaagaccgtcgttgct
gagtacgccattgccatggcgttccgggacaagcagagggtcatctacacctccccgctc
aaggccctgagcaaccagaagtacagggagctcagccaggagttcaccgatgtcgggctg
atgacgggcgacgtcacgctccagcccaacgccacgtgcctggtcatgacgacggagatc
ctcagggccatgctctacaggggctctgaggtgatcaaggaggttgcctgggttatattc
gatgagattcattacatgaaggatcgtgagaggggagtcgtgtgggaggagagtataatt
ttcctgccccctgccatcaagatggtctttctttccgctaccatgtcaaatgcgactgag
tttgcggagtggatatgcagtctgcacaagcagccctgtcatgttgtgtatacggacttc
aggccgacaccattgcagcactatgtgtttccaataggcggttctggtctctaccttgta
gtagatgaaaatggccagttcagagaggataactttgggcagctacaggactcgttcagt
aagcaaaataatcaactagatggaaggaaaggtggtggacctaaagcaagtggtcgaatt
gcaaaaggtggaagtgcctctgggaattctgacatatatagaatcgtcaagatgattatg
gagcgcaagtttcaaccagtcataattttcagctttagtagaagagaatgtgagcaccat
gccatgtctatgtcaaaacttgacttcaacactgaagatgaaaaggaatgcatcgagcaa
gttttccgtaatgctattagttgtttagttgaggaagatagaagtttaccagctatagag
ttgatgttgccgcttcttaaacgaggcatagcagtacaccattctggattacttccaata
atcaaggagctggtggaattgctctttcaagaaggtcttgtgaaagctctctttgcaact
gagacatttgccatgggtcttaatatgcctgcaaaaacagttgttttcacatctgtcaaa
aaatgggatggtgatactaaccgctatattggttctggagaatatatacagatgagtgga
agagctggccggcgtggcaaggatgaacgtggcatttgcgttataatgatagatgagaag
atggaaatgagtgttatcaaggacatggtgttaggcaaaccggcaccccttgtcagtaca
ttccggctgagctattacactattctgaacttaatgagccgtgtggagggccaatttacc
gctgagcatgtgattaggaattcattccatcagtttcagtatgagaaggcattgccagaa
atagttcaaaagattacacggttggagaatgaagctaccttgcttgattcttctggggag
actgatcttgctgaatatcacaaattgggccttgatatatctgaacttgagaagaaaatc
atgtctgagatgattagaccagagagggctttgttgtatttggttcctggaaggctggtt
aaagtgagggatggttcaacagactggggatggggtgtggttgtaaatgtagtgaagaaa
cctccagcatctggtactcttccccctgcactaagtgcagcacgtggtaatagctatata
gtggataccctgcttcactgctcttctatttccaatgagaatggatcacgttcaaagcca
tgcccgcctcgctcaggcgagaagggtgaaatgcatgtggtgcctgtaccattaccttta
atatctggtctaagcagtgttagaatcaacattcctccggatctacgaccacctgaagca
agacaaaatatactttttgcagtgcaagaactaggaaaacgctacccccaaggcctacca
aagctacatccaatcaatgacatgggtattcaagaacctgaactagtagacttggttcat
aaacttgaggaacttgagcagaaactatgttctcaccgacttcataagtctggtcaaagt
gagcaggaattatcatggtaccaaagaaaagcagatttgaatagtgaaattcagaatttg
aagtcaaagatgcgggattcacagatacaaaaatttagagacgaacttaggaaccggtca
cgcgttctgaagatgctcggtcatattgatggtgatggtgttctccagctaaagggacgt
gctgcctgtttaatagacactggggatgagctgcttatcactgagcttatgttcaatggt
acatttaatgatctcgatcatcatcaagttgcttcccttgctagctgctttgtaccttgt
gataaatcaagtgagcaaatacgcttgagaaatgaactttccaggccaatgatgcaactt
caggaggctgcgagaaaaatagctgaggtacaacgagaatgcaaactggaagtaaatgtg
gaggaatatgttgaatcaacctgcagaccgtacctgatggacgtcatatactgctggtca
aggggagcgacctttgcagaggtgatggaaatgaccgacattttcgagggaagtgtcata
aggcttgctagaaggctggatgaatttctgaatcagttgagagctgctgcagaagccgtc
ggggaggttaacctcgagaagaagtttgagaaggcgagcgagagcttgcgtcggggtatc
atgttttccaactcattgtatctgtaa
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