Panicum hallii (Hall's panicgrass): 112902409
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Entry
112902409 CDS
T07366
Name
(RefSeq) nuclear pore complex protein NUP98A-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112902409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112902409
03036 Chromosome and associated proteins [BR:
phai03036
]
112902409
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112902409
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
112902409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
112902409
NCBI-ProteinID:
XP_025827260
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Position
8:120655..126485
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AA seq
919 aa
AA seq
DB search
MFGSTNPFGQSSTSPFGQNSFGTQQGFGQATPAASNPFAPKPFGSPTTTFGAQTGSSLFG
TTSTGAFGQQQSTPTFGTTSTAAFGQQQSTPTFGTPSSSPFGSSPAFGASPTPAFGATSS
TFGSGSLFGQKPSFGGFGSSPSQSSPFGSTFQQTQPTFGSSTFGTSTTPTFGTTTTPAFG
VTTPALGTTTTPAFGATTTPALGSTSPSLFGASSTPAFGSSAPGFGTSATTAFGVSSATP
GFGSSSTPSFGTSTNAFSFGSSPSFGQTAVSSGSSPFGTTSPFGAQTPAFGSQTAAPAFG
QAQFGNQARGTRIKPYAQTPDVDGATSGTQPAAKLDSISAMPEYKDKSHEELRWEDYQRG
DKGGSNPSGTPTLTPTFPSSTPPNTFTTSSLFSQTTPNPFSSNNPFAKNGSTGASLFNTS
FNNTTVASSSPFTSSTSTTMFGQTGVSAFPASSSPSLFPNTAPAFASSSLFGTSTTSNSS
LFGTGLSLANTQSAPLFQSSPAFAQQPSSTPAFSSGNLFSTPNTGSLFGSGPSLFTTPTF
QQPAPAQTPNMFSFQPPSQPASTGGFPGFSNTANQALIGQQTPSQSNMVMQPAPVSNPFG
TLPAMPQMSIGNGGSSPSVQYGISLPVTDKPLPSRTLSVAVPRHFLQRRIKLLPRKYNPI
SDGKVPFFADEEESPATPKADAFFIPRENPRNLIIRPIEQWPPRSGINRQLVPKDSAGLD
KYEDASTENACDKAVKSPSSSPLVENGKQHEPSHHGNGKGTSVEGLPKLPQADYFTDPSL
EELAAKERGEPGYCGRVKDFVVGRHGYGSIKFLGETDVRGLDLESIVEFNNREVIVYKDD
NKKPPVGEGLNKAAEVTLLNIKCVNKKTRVEYQEGPRVDRYRQMLMKKVEEQGAEFVSFD
AAKGEWKFRVKHFSAYGLW
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgttcggctccaccaacccatttggccagtcatcaaccagcccatttggccagaactca
ttcggaacccagcagggattcggccaggctacccctgctgctagcaacccctttgcgcca
aaaccatttggcagcccaaccacaacttttggggcacagactggaagctcacttttcggc
actacatccactggtgcatttggccagcagcagtccactcctacatttggcactacatcc
actgctgcgtttggccagcagcaatccactcccacgtttggcaccccgtcctcctctcca
ttcgggagctctccagctttcggtgcatcgcccactcctgcctttggtgctacatcctct
acctttggctctggatctttatttggacaaaagccaagtttcgggggttttggatcatct
cctagccagtcaagtccttttggtagcacgttccagcaaacacaaccgacatttggcagc
agcacttttggtacatcaactacaccgacattcggtaccacaactacgccggcatttggt
gtaactacaccagcccttggcaccacaactacaccggctttcggcgccacaactacccca
gcacttggttcaacatcgccatctttatttggtgcttctagcaccccggcatttggttca
tctgctcctggttttggaacttcagcgaccacagcatttggtgtgagtagtgctactcca
ggttttggatcttccagcacaccttcatttggcacatcaaccaatgcattcagttttggt
tcttcaccatcttttggacaaacggcagtttcctctggtagttctccctttggaacaaca
tcacctttcggtgcgcagactccagcatttggctcacagacagcagcacccgcttttggg
caagcacaatttggtaatcaagctcgagggactagaataaaaccttatgctcaaacacca
gatgttgacggtgctaccagtggtactcagcctgctgcgaaacttgattccatatcagcg
atgcctgaatacaaagacaagagtcatgaagaattgaggtgggaagattaccagcgcgga
gacaagggtggatcaaacccttctggaactccaacactgacgcctacctttccatcatca
acaccaccaaatacttttacaacaagcagtctatttagccaaactactccaaacccattt
tcatcaaacaatccatttgctaagaatggttcaactggtgcatcactattcaacacctca
tttaacaatacaacagttgcaagttcgagcccattcacatcgtccactagtaccacaatg
tttggacaaacaggtgtttctgcatttccagcaagtagttcaccatctttgtttccaaat
actgctcctgcttttgcttcatcttcgttgtttggcacatcaacaacaagtaattcaagt
ctattcggcactggcttgtcgttggctaacactcaatcagccccactatttcaatcttcc
cctgcatttgcacaacagccatcaagtacaccagctttctcctctggaaacctatttagt
acacctaatactggcagtctgtttggcagcggaccttcactttttacaacgccaacattt
caacaacctgcccctgctcaaactccaaacatgttctccttccaacctccgtctcaacca
gcttctacaggtggatttcctggtttttccaacactgctaatcaggccctcattggacag
caaactcctagccaatccaatatggtcatgcaacctgctcctgtttcgaatccatttggg
acacttccagcaatgcctcagatgtccattgggaatggtggatcttctccttcggttcaa
tatggaataagtttaccagttactgataagcctcttccgagtagaacattgtccgtggcg
gttcctaggcattttttacagagaagaatcaaattgctgccaagaaaatataatccaata
tcagatggcaaggttccattctttgctgatgaggaggaatctcctgcaacaccaaaagcg
gatgcttttttcatccctagagagaacccgaggaatctgataatccgtccaatcgagcag
tggcccccgcggagtggaattaacaggcaattagttccaaaggattcagctggtttggac
aaatatgaagatgcttccactgaaaatgcgtgcgataaggctgtcaagtcaccaagcagc
agtcctctggtggaaaatggcaagcagcatgagcccagtcatcatgggaacgggaagggc
acttcagttgaggggttgcctaagctccctcaggcagattacttcacagatcctagtctg
gaggagcttgctgccaaagaacgtggtgagccaggctactgcggtcgggtgaaggacttt
gttgtggggcgccatggctatggcagcatcaagttcctgggggagacagatgtgcggggc
ctggatctggagtcaatcgtggagttcaacaacagggaggttattgtgtacaaggacgac
aacaagaagcccccggtgggtgaggggctgaacaaggctgcggaggtgactcttctgaac
atcaagtgcgtgaacaagaagacgagggtggagtaccaagagggcccgcgggtggacagg
taccggcagatgctgatgaagaaggtggaggagcagggcgccgagttcgtgtcatttgac
gcggccaagggagagtggaagttcagggtgaagcacttcagcgcctacgggctctggtga
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