Panicum hallii (Hall's panicgrass): 112902487
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Entry
112902487 CDS
T07366
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52C-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112902487
03041 Spliceosome [BR:
phai03041
]
112902487
03036 Chromosome and associated proteins [BR:
phai03036
]
112902487
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112902487
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
112902487
mRNA cycle factors
Common to processing body (P body) and stress granule
112902487
Spliceosome [BR:
phai03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
112902487
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
112902487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
112902487
NCBI-ProteinID:
XP_025827388
LinkDB
All DBs
Position
8:41098787..41103566
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AA seq
612 aa
AA seq
DB search
MATSRTSWADVADAEPAPPPPVTTPAPAPAASNGPARSSYVPPHLRNRSASSAAAPAPSS
AAGLLSRPGGGFGAGAARPRGGPRWDREPDPFAGSEPPLPPADAAPADGAAPFEDHQNTG
INFDAYEDIPVETSGRDVPPPVATFAEIDLGAALNDNIRRCRYVRPTPVQRHAIPISLAG
RDLMACAQTGSGKTAAFCFPIISGIMRGPPAGRPQRGGGMGMRTAYPSALILSPTRELSM
QIHEEARKFSYQTGVRVVVAYGGAPITQQLRDLERGVDILVATPGRLVDLLERARVSLQS
IRYLALDEADRMLDMGFEPQVRRIVEQMDMPPPGVRQTMLFSATFPKEIQRMASDFLENY
IFLAVGRVGSSTELIVQRIEFVQEADKRSHLMDLLHAQRDTGKQTLTLVFVETKRGADSL
ESWLCMNGFPATSIHGDRNQQEREYALRSFKSGQTPILVATDVAARGLDIPHVAHVVNFD
LPNDIDDYVHRIGRTGRAGKSGLATAFFNDNNSSMAKSLAELMQESNQEVPAWLSRYAAR
PSYGGGGGRNRRSGGGSRFGGRDFRSDSSSFGKGGSRGGGDYYGGGSSGGYGGSSSYGGG
GYGGAGAPSAWD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggcgacctcccgcacgtcctgggccgacgtcgccgacgccgagcccgccccgcccccg
cccgtcaccacccccgcccccgctcccgcggcctccaacggccccgcccgctcctcctac
gtcccgccccacctccgcaaccgctccgcctcctccgcggccgccccggccccgtcctcc
gccgccggcctcctctcccgccccggcggcggcttcggcgccggcgccgcccgcccccgc
ggcggcccccgctgggaccgcgagccggaccccttcgcgggctccgagccccccctcccc
cccgccgacgccgccccggccgacggcgccgcccccttcgaggaccaccagaacacgggc
atcaacttcgacgcctacgaggacatccccgtcgagacctcgggccgcgacgtgcccccg
cccgtcgccaccttcgccgagatcgacctcggcgccgcgctcaacgacaacatccgccgc
tgcaggtacgtgcgccccacccccgtgcagcgccacgcgatcccgatctcgctcgcgggc
cgggacctcatggcctgcgcgcagaccgggtccgggaagacggcggccttctgcttcccc
atcatcagcggcatcatgaggggaccgcccgcggggaggccgcagcggggcgggggcatg
gggatgaggacggcctacccgtccgcgctcatcctatcgcccaccagggagctctccatg
cagattcatgaggaggccaggaaattttcgtaccagactggtgttagggtagttgttgct
tatggaggagcgccgattacgcagcagttaagagatcttgagaggggtgttgacattctt
gtggctacccctggccgtttggttgacttgttggaaagggcaagagtgtcattgcagtca
attagataccttgcccttgatgaggcagatagaatgcttgatatgggtttcgaaccacaa
gtcagaagaattgttgagcaaatggacatgcctccaccaggtgtcaggcagacaatgctt
tttagtgcaacattcccaaaagaaatccagagaatggcatcagacttcctggagaactac
atcttcctggctgttggaagagttgggtcgagtactgaattgattgtccagagaattgaa
tttgtgcaggaggcagataaaagaagtcacctgatggaccttcttcatgcccaaagagat
actggaaagcaaactctcacacttgtctttgtggaaaccaaaaggggtgctgattcattg
gaaagctggttgtgcatgaatgggtttccagctacttctatccatggagatagaaatcag
caggaaagagaatatgctttgagatccttcaagagtgggcagactcctatcttggttgct
acagatgtggcagctcggggccttgacattcctcatgttgctcatgttgtgaactttgat
ctccccaatgatattgacgactatgtacacaggattggaagaactgggagagcaggaaag
agcggccttgcaactgccttcttcaacgataataactcatcaatggcaaaatctcttgct
gaactaatgcaagaatctaaccaggaagtacctgcatggctctcacgctatgcagctcgc
ccatcttatggtggtggtggggggaggaacagacggtctggaggtgggagccgcttcggt
ggccgtgacttccgcagtgactcttcctcattcggcaaggggggttctcgtggaggtggc
gactactacggtggaggcagcagtggtggttatggtggttcctcttcatatggtggtggt
ggatatggtggagctggggctcctagtgcttgggattga
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