Panicum hallii (Hall's panicgrass): 112903487
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Entry
112903487 CDS
T07366
Name
(RefSeq) clathrin heavy chain 1
KO
K04646
clathrin heavy chain
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai04142
Lysosome
phai04144
Endocytosis
phai05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112903487
04142 Lysosome
112903487
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
112903487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
phai04131
]
112903487
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
phai04147
]
112903487
Membrane trafficking [BR:
phai04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
112903487
Exosome [BR:
phai04147
]
Exosomal proteins
Proteins found in most exosomes
112903487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
IcmW
Motif
Other DBs
NCBI-GeneID:
112903487
NCBI-ProteinID:
XP_025828540
LinkDB
All DBs
Position
8:335888..345783
Genome browser
AA seq
1709 aa
AA seq
DB search
MAAANAPIAMREALTLTSLGIAPQFVTFTHVTMESEKYICVRETSPQNSVVIIDMAMPMQ
PLRRPITADSALMNPNTRILALKAQIPGTTQDHLQIFNIEAKTKIKSHQMPEQVVFWKWI
TPKLLGLVTQTSVYHWSIEGDSEPTKMFDRTANLANNQIINYRCDPAEKWLVLIGIAPGA
PERPQLVKGNMQLFSVDQQRSQALEAHAASFASFKVVGNENPSTLICFASKTTNAGQITS
KLHVIELGAQPGKPGFSKKQADLFFPPDFQDDFPVAMQVSQKYGLIYVITKLGLLFVYDL
ETAAAVYRNRISPDPIFLTAESSSTGGFYAINRRGQVLHATVNDATVVPFVSGQLNNLEL
AVNLAKRANLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGLLRTPETVAKFQSVPVQ
AGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV
KTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQ
GAVNFALMMSQMEGGCPVDYNTITDLFLQRNMIREATAFLLDVLKPNLPEHAFLQTKVLE
INLVTYPNVADAILANGMFSHYDRPRIAQLCEKAGLYLRALQHYSELPDIKRVIVNTHAI
EPQALVEFFGTLSREWALECMKDLLLVNLRGNLQIVVQAAKEYSEQLGVDACIKLFEQFK
SYEGLYFFLGSYLSSSEDPEIHFKYIEAAARTGQIKEVERVTRESNFYDAEKTKNFLMEA
KLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPE
DFIKGLILSVRSLLPVEPLVDECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDS
NNNPEHFLTTNPFYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARY
VVERMDGDLWDKVLQPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIE
LLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYE
EAFAIFKKFNLNVQAVNVLLDNIRSIERAEEFAFRVEEDAVWSQVAKAQLREGLVSEAIE
SFIRADDAAHFLDVIRAAEEANVYNDLVKYLLMVRQKAREPKVDGELIFAYAKIDRLSDI
EEFILMPNVANLQNVGDRLYDEELYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARK
ANSTKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGCFNELIALMESG
LGLERAHMGIFTELGVLYARYRSEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYI
QYDEFDNAATTIMNHSPDAWDHMQFKDVCVKVANVELYYKAVHFYLQEHPDLINDMLNVL
ALRLDHTRVVDIMRKAGQLHLVKPYMVAVQSNNVSAVNEALNELYVEEEDYERLRESVDM
HDNFDQIGLAQKLEKHELLEMRRIAAYIYKKAGRWKQSIALSKKDNMYKDCMETCSQSGD
RELSEDLLVYFIEQGKKECFASCLFICYDLIRPDVALELAWMNNMVDFAFPYLLQFIREY
TSKVDDLVKDKIESQNEERAKEKEEKDLVAQQNMYAQLLPLALPAPPMPGMGGPPPMGGM
GMPPMGGMGMPPMGPGPMPAFGMPPMGSY
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccaacgcccccatcgccatgcgcgaggccctcacgctcaccagcctgggc
atcgccccgcagttcgtcaccttcacccatgtcaccatggagtcggagaaatacatctgc
gtccgcgagacctcgccgcagaacagcgtcgtcatcatcgacatggccatgcccatgcag
ccgctccgacggcctatcaccgccgactctgcgctcatgaaccccaacaccagaatcctc
gcgctcaaagcccaaatacctgggacaacacaggatcaccttcaaatattcaatattgag
gctaagactaagataaagtctcatcagatgccggagcaggttgtgttttggaaatggatc
actcccaagttgttgggtttagtaacacaaacatcagtttatcactggtcaattgaaggt
gattctgagcccaccaagatgtttgataggacagctaatctggcaaacaaccagatcatc
aactaccgatgcgacccagctgagaagtggcttgtgcttattgggattgcacctggtgcc
ccggagaggccacagctggtgaagggaaatatgcaacttttttctgttgatcagcagcgt
agccaggcacttgaagcccatgcagcatcttttgcatcatttaaggttgttggtaatgag
aacccatcaacccttatttgtttcgcctcgaagacaactaatgctggacaaatcacttca
aagttgcatgttattgaattgggcgcccagccagggaaacctggcttttctaagaaacaa
gccgacctcttcttcccaccagatttccaggatgattttcctgtagctatgcaggtttca
caaaagtatgggcttatctatgtaattacgaagcttggccttttgtttgtatatgatttg
gaaactgctgcagcagtttacagaaatagaattagtccagaccctatattcttgacagca
gaatcttcctcgactggtggattttatgccatcaacagaagagggcaggttttacatgcc
acagttaatgatgcaaccgttgtgccttttgtcagtggtcagttaaacaaccttgagcta
gctgtgaatcttgccaagagagccaatcttcctggtgcagagaacttggttgtgcaaaga
ttccaggaactgtttgcacagacgaaatacaaggaagcagctgagctggccgcagaatct
cctcaaggcctcctgagaacacctgagactgttgcaaagtttcagagtgttcctgtgcaa
gctgggcaaacacccccactgttacagtactttggtacattgctaactcgagggaagctc
aacgcctttgagtctcttgagctatctcgacttgttgtcaatcagaacaaaaagaacctt
ctggaaaattggttggcggaagacaagctagagtgcagtgaagaacttggagatcttgtc
aagactgtggacaatgatcttgccctaaaaatatacataaaggctagggcaacccctaaa
gttgttgcagcttttgctgaaaggagggagtttgacaagattcttatatactcaaagcag
gttgggtacactccagattatctcttccttctccagaccattttgcgtacagatccacag
ggagctgtgaactttgctctcatgatgtcacaaatggaaggtggttgtccagtagattat
aatactattactgatcttttccttcagaggaatatgatacgggaggcaacagcttttttg
ttggatgttctgaaaccaaacttgccagagcatgcttttcttcaaaccaaggttttggag
ataaacttggtgacatacccaaatgttgctgatgccattcttgctaatggtatgttcagt
cattacgaccgccctcgtattgctcagctgtgtgaaaaggcgggcttgtacttgcgtgct
ctccagcattactcagagttacctgatatcaagcgtgtcatcgtcaatacccatgccatt
gagccacaggctcttgttgagttctttggcaccctgtcaagagagtgggccttggagtgc
atgaaggaccttctactggtcaatctgagggggaatcttcaaatcgttgtgcaggctgca
aaagaatactccgagcagctaggagttgatgcttgcataaaactatttgagcaattcaaa
tcttacgagggcctttactttttcttaggatcctatttgagctccagtgaggacccagaa
atccatttcaaatacattgaagcagctgccaggactggacagatcaaagaagtggaacgt
gtaaccagagagtctaacttctatgatgctgagaagacaaagaacttcttgatggaagca
aaactacctgatgcccgcccactgattaatgtttgtgaccgctttggttttgtgccagat
ctcactcactatctgtacacgaacaacatgcttcggtatattgaaggctatgtacagaaa
gtgaatcctgggaatgctcccttggtagtgggccaactactcgacgatgagtgccctgaa
gattttattaagggtttgattctctctgttcgttccctccttcctgttgagccactggtt
gatgaatgcgagaagaggaaccgcctacgtttgctcactcaattcttggagcacttagtg
agcgaaggtagccaagatgttcatgtccacaatgctcttgggaaaataatcattgacagc
aacaataatcctgagcatttccttactaccaacccattttatgactcgcgcgttgtgggt
aaatactgtgaaaagcgggatcctacacttgctgttgttgcttacaggcgtgggcagtgt
gacgatgaacttattaacgtcactaacaaaaactcattgttcaagctgcaagccagatat
gtggttgagagaatggatggtgatctgtgggataaagttcttcagcctgagaatgaatat
agaaggcagctcattgaccaggtggtttcgaccgcattacctgagagcaagagcccggag
caagtgtctgctgctgttaaggctttcatgactgctgacctccctcatgaattgattgag
cttcttgaaaagattgttcttcagaattctgcgttcagtggaaatttcaatctgcagaac
ctgctcatcttgactgcgatcaaggcggacccatcgagagtcatggactatgtgaacaga
cttgacaactttgatgggcctgctgttggggaagttgctgttgaagcacaattgtatgaa
gaggcttttgctatattcaagaagttcaacttaaatgtgcaggctgtcaatgttctcttg
gacaacatccgaagcatagaaagagctgaggagtttgctttccgtgttgaagaagatgct
gtttggagccaggttgccaaggcccagttacgtgaaggtttagtcagtgaagcaatcgag
tccttcatccgcgcagatgatgcggcacatttccttgatgtcatccgtgctgctgaggag
gccaatgtgtacaatgatttggttaagtatcttctgatggtaagacaaaaggcaagggag
cccaaagttgatggagaactcatctttgcatatgctaagattgatagactcagtgatatt
gaagagttcattcttatgccaaatgttgccaacctccaaaatgttggtgatcgtttgtat
gatgaagagctatatgaagctgcaaagatcatctatgccttcatctcaaactgggctaag
ctggctgttaccctggttaagctgaagcagttccaaggtgctgtggatgctgctcgtaag
gctaacagcacgaaaacatggaaggaggtctgctttgcttgtgttgatgcagaggagttc
cgtcttgcacagatatgtggtctaaatattattgtccaggttgatgacttagaagaagtg
agtgaatactaccagaatagaggatgcttcaatgaacttattgctctcatggagagtggt
cttggtcttgaacgtgcacacatgggcatcttcacagaactgggagttctgtatgctaga
taccgctctgagaagcttatggagcacatcaaacttttctccacccgtctcaacattcct
aagcttatccgggcttgcgatgaacagcaacactggaaagaacttacctacctgtacata
cagtacgatgaatttgacaatgctgccaccactatcatgaaccactctccagatgcctgg
gatcatatgcagttcaaggatgtttgtgttaaagttgcaaatgttgaactatattacaag
gcagttcacttctatttgcaagagcaccctgatctcatcaacgatatgctaaatgtgctt
gcgctccgtttggatcataccagagttgtagacataatgcgcaaggctggtcagctgcat
cttgtgaagccttatatggttgcagttcagagcaacaatgtctctgctgtgaatgaagcg
ttgaatgagctttatgttgaagaggaagactacgagagactccgggaatcagttgacatg
cacgataactttgatcagataggtcttgctcagaagcttgagaagcatgaattgcttgag
atgaggaggattgctgcctacatctacaagaaggctggcagatggaagcaatccattgct
ttatcaaagaaagacaacatgtataaggattgcatggagacatgctcgcagtctggtgac
cgtgaactatcagaggacttgcttgtctatttcatcgagcagggaaagaaagaatgcttt
gcatcttgcctcttcatttgttatgacttgatccggcctgatgttgcccttgagcttgca
tggatgaacaacatggtggactttgccttcccatatctcctgcagttcattcgtgaatac
accagcaaggttgatgatttagtcaaggacaaaattgagtcacaaaatgaggaaagagcc
aaagagaaggaggagaaagatcttgttgctcagcagaacatgtatgcccagctgcttcct
cttgctttacccgctccgccgatgcctggcatgggtggtccacctccgatgggtggaatg
ggcatgcctccaatgggtggaatgggtatgcctccaatgggtcctggtccgatgccagca
tttggaatgccgccaatgggaagctactag
DBGET
integrated database retrieval system