Panicum hallii (Hall's panicgrass): 112903587
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Entry
112903587 CDS
T07366
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112903587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112903587
03036 Chromosome and associated proteins [BR:
phai03036
]
112903587
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112903587
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
112903587
mRNA degradation factors
5'-3' decay
Decapping complex
112903587
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Gene silencing
piRNA pathway
112903587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
TFIIA
Motif
Other DBs
NCBI-GeneID:
112903587
NCBI-ProteinID:
XP_025828643
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All DBs
Position
1:50853364..50860006
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AA seq
521 aa
AA seq
DB search
MDPRARYPPGMGNGRGGNPNYYGRGPPPHQPHQHNYQHQQTSGAHHHQQYAQRQQQQHHQ
NHNHNHHQQQQQHHNHHQQQQQQQWLRRNQIAREAVGAAGTSEPKALVPSTAADGVDSSS
QDWKAQLKLPPQDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPI
ALTGSDILARAKNGTGKTAAFCIPALEKIDPDNNAIQVVILVPTRELALQTSQVCKELGK
HLKIQVMVTTGGTSLKDDIVRLYQPVHLLVGTPGRILDLTKKGVCILKDCSMLIMDEADK
LLSPEFQPSVEQLIRYLPASRQILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGIT
QFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQ
DHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGH
LGLAVNLITYEDRFNLYRIEQELGTEIKPIPPQIDQAIYCQ
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggatccgcgcgccaggtaccctccgggcatgggcaacggccgcggcgggaaccccaac
tactacggccgcggaccgccgccgcaccagccgcaccagcacaactaccagcaccagcag
acgtcgggggcgcatcaccaccagcagtacgcgcagaggcagcagcagcagcaccatcag
aaccacaaccacaatcaccaccagcaacagcagcaacaccacaatcaccaccagcaacag
cagcagcagcagtggctgcggcgtaaccagatcgcccgcgaggccgtgggcgcggccggt
accagcgagccgaaggccctggtgccatccacggccgccgatggcgtggattcgagttca
caagattggaaggctcaattgaagctgccgcctcaagatacacgctacaggacagaggat
gttacagccactaagggaaatgagttcgaagactactttctcaagcgtgaactcctgatg
gggatatatgagaagggatttgaaagaccctctcctatccaagaagaaagcattcctatt
gctttaactggtagtgacattcttgcaagagcgaagaatggaactggcaagactgctgca
ttttgtattcctgctctggaaaagattgatccagataataatgctattcaagttgttata
ttggttcccactagggaattggctctacagacatcacaagtttgcaaggagctcggtaaa
catttgaagattcaagttatggttaccactggtggaaccagcttgaaggatgatattgtc
cgtctgtaccaacctgtacatttacttgttggaacacctgggcgtattttggatcttaca
aagaaaggtgtttgcattttgaaggactgttcgatgcttattatggatgaggcagacaag
cttctctctcctgagtttcaaccttccgtggaacagttgattcgctacctccctgctagt
cgacagattttgatgttctcagcaacattccctgtgacggttaaggagttcaaggacaaa
tatctgcctaaaccttacgtgattaaccttatggatgaacttacactgaagggaattaca
cagttctatgcgtttgttgaagaaagacagaaagttcactgtcttaacaccctcttttcc
aagcttcaaatcaaccagtcaataatattctgtaactctgtaaatcgtgttgaactattg
gcgaagaagatcacagaacttggttattcttgcttctatattcatgcgaagatgcttcaa
gaccatcgtaatagagttttccatgatttccgtaacggggcgtgcaggaaccttgtttgt
actgatctttttacaaggggaatagatattcaagctgtcaatgtcgttatcaattttgat
ttcccgaagaactctgaaacatatctccacagggttggtagatctgggaggtttggccac
cttggtctggctgtgaatttgatcacctatgaggatcggtttaacttgtataggattgaa
caagagcttgggactgaaataaaaccaattcctcctcagatagaccaggctatatattgc
caataa
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