Polaribacter haliotis: H9I45_09785
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Entry
H9I45_09785 CDS
T06834
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
phal
Polaribacter haliotis
Pathway
phal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H9I45_09785 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phal03400
]
H9I45_09785 (mfd)
Enzymes [BR:
phal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H9I45_09785 (mfd)
DNA repair and recombination proteins [BR:
phal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H9I45_09785 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
UB2H
Motif
Other DBs
NCBI-ProteinID:
QOD59648
UniProt:
A0A7L8AC97
LinkDB
All DBs
Position
2301049..2304378
Genome browser
AA seq
1109 aa
AA seq
DB search
MSKQHIVNQYQKTANVSQIVTALQQEKNHFQISNLVGSSLSFVISETFKKADKPYLLIFN
DKEEAAYYLNDLEQLLGDKNVLFYPGSYRRPYQIEEIDNANILLRSEVLNRINSRKKPVI
IVTYPTALFEKVVTKKELEKNTLKVTVGENLSLDFVNEILFEYKFKRVDFVTEPGDFSVR
GGIIDVFSFSNDEPYRIEFFGDEIDSIRSFDVETQLSKEKMKKVSIMPNVENKTLQESRE
SFLKYIADKTVIFTKNLDLLAGNLDKFYQKAEEAFNDLSKEIKHAKPAELFCDGTYIKNQ
IEEFSLVNFGNQNKENAEISFNTISQPSFNKQFNLLIANLEEYHKAGFTNYIFCANDQQA
KRFHDIFDDADEDVHYETVVFPLYQGFVDVDNKLVCYTDHQIFERYHKFRLKNGYAKKQA
ITLQELNKLEIGDYVTHMDHGIGKFGGLQKIDVQGKKQEAIKLVYGERDILYVSIHSLHK
ISKFNGKDGKAPKIYKLGSGAWKKIKQKTKARVKHIAFNLIQLYAKRKLQKGFSFGPDTH
IQHELEGSFMYEDTPDQFTATQDVKNDMEKEQPMDRLVCGDVGFGKTEVAVRAAFKAVDN
GKQVAILVPTTILAFQHFKTFSERLKDFPIRIDYLNRFRTAKQKTAAIDGVNDGSVDIII
GTHQLTNQRIKFKDLGLLIIDEEQKFGVAVKDKLKTLKENVDTLTLTATPIPRTLQFSLM
AARDLSVIKTPPPNRHPIESNVIRFSEEVIRDAISYEISRGGQVFFIHNRIENIKEVAGL
LQRLVPSAKIGIGHGQMEGKKLEGLMLGFMDNEFDVLVSTTIIESGLDVPNANTIFINNA
NNFGLSDLHQMRGRVGRSNKKAFCYFITPPYHMMTDDARKRIEALVLFSDLGSGINIAMK
DLEIRGAGDLLGGEQSGFINDIGFDTYQKILQEAIEELKENEFADLYPTDNSKPKEYVKE
VQIDTDFEILFPDDYVNSITERLALYNKLGTLEKEEELQTFEKEIIDRFGEFPTQVEDLL
DSVRIKWLAKELGLEKIILKQKRMLGYFVSNQQSDFYQTEAFSRMLKYVQQNPKSCVMKE
KETKNGLRLLITFIRIDSVKTGLSILQKI
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaagcagcacattgtaaatcaatatcaaaaaactgcgaatgtttcgcagattgtt
acagcccttcaacaagaaaaaaaccattttcaaatatcgaacttggttggttcttcgttg
tcttttgttatttccgaaacttttaaaaaagcagacaaaccatatcttttaatatttaat
gataaagaagaagctgcttattatttaaatgatttagagcaacttttaggagataaaaat
gtgcttttttatccaggatcatacagaagaccttatcaaattgaagaaatagataatgcc
aatatattattacgttcagaggttttaaatagaataaactctagaaaaaaaccagtaata
atagtaacatatccaactgcccttttcgaaaaagtagttaccaaaaaagagttagaaaaa
aatactttaaaagttactgttggcgaaaatttgtctttagattttgtaaacgaaatttta
tttgagtacaagtttaaacgagtagattttgtaacagaaccaggagatttctctgttcgt
ggaggaattatagatgttttttcgttttctaatgacgagccatacagaattgaatttttt
ggagatgaaattgatagtattcgttcttttgatgtagaaacgcaactttctaaagaaaag
atgaagaaggtttctataatgccaaatgtagaaaataaaactttacaagaaagtagagaa
agtttcttaaaatatattgctgataaaacggttatttttacaaaaaaccttgatttattg
gcaggaaatttagataaattctatcaaaaagcagaagaagcttttaacgatttatctaaa
gaaataaaacatgcaaaacctgctgaattattttgtgatggaacctatataaaaaaccaa
attgaagaattttctttggtgaattttggaaatcaaaataaagaaaatgccgaaattagt
tttaacacaatttctcaaccttcatttaacaaacagtttaatttattaattgcaaattta
gaagaatatcataaagctggttttaccaattatattttttgcgcaaacgaccaacaagca
aaacgttttcatgatatttttgatgatgcagatgaagatgtccattacgaaactgttgtt
tttccattataccaaggttttgtagatgtagacaataaattagtttgttatacagatcat
caaatttttgaacgttatcataaattcagattaaaaaatggttatgcaaaaaaacaggcc
attactcttcaagaattaaataaactagaaattggcgattatgtaacacacatggatcat
ggaattggaaaatttggtggtttacaaaaaattgatgttcaaggtaaaaagcaagaagcc
attaaattggtttatggcgaacgtgatattttatacgtgagcattcactcgcttcataag
atttctaaattcaatggaaaagatgggaaagcacctaaaatttacaaattaggttctgga
gcttggaaaaaaataaaacagaaaacaaaagccagagttaagcatattgcgtttaatcta
attcaattatatgcaaaaagaaaattacaaaaagggttttcttttggaccagatacacat
attcagcatgaattagaaggtagttttatgtatgaagatactccagaccaatttacagca
acacaagatgtaaaaaatgatatggaaaaagagcaaccaatggacagattggtttgtggt
gatgtaggttttggaaaaacagaagttgctgtaagagctgcctttaaagctgttgataat
ggaaaacaggtcgcaattttagtgccaactactattttggcatttcaacattttaagact
ttttctgaaagattaaaagattttccaattagaatagattatttaaatcgctttagaact
gcaaaacaaaaaactgcagccatagatggtgtaaatgatggttctgtagatattattatt
ggtacgcatcaactaacaaatcaacgaataaagtttaaagatctaggacttttaattata
gatgaagagcaaaaatttggtgttgctgtaaaagataagctgaaaactttaaaagaaaat
gtagatacgttaacccttactgctactccaattccaagaactttgcaatttagtttaatg
gctgcaagagatttatctgtaataaaaacgccaccaccaaatagacatccaattgagagt
aatgtaattcgtttttcggaagaagtaattcgtgatgcaatttcgtatgaaatctcaaga
ggaggccaagttttctttattcataatagaatagaaaacataaaagaagtcgcaggtttg
ttgcaaagattggttccttctgcgaaaataggaattggtcatggacaaatggaaggcaag
aaactggaaggtttaatgcttggttttatggacaatgaatttgatgttttggtttctaca
acaattattgaaagtggattagatgtgccaaatgcaaacaccattttcattaataatgcg
aataattttggtttgtctgatttacaccaaatgcgtggtagagttggtcgttctaacaaa
aaagccttttgttattttataactcctccttatcatatgatgacagatgatgccagaaaa
agaattgaagccttggttttattttctgatttaggaagtggaattaacattgccatgaaa
gatttagaaattcgtggtgctggagatttattaggtggtgaacaaagtggatttattaat
gatattggttttgatacgtatcaaaaaatattacaagaagccattgaagaattgaaagaa
aatgagtttgcagatttgtatccaacagataattccaagccaaaagaatatgtaaaagaa
gtacaaatagataccgatttcgaaatactttttcctgatgattatgtgaattcaattaca
gaaagattggctttatacaacaaattaggaacgttagaaaaagaagaggaattacaaact
tttgaaaaagaaattatagatagatttggcgaatttccaacccaagttgaagatttgttg
gattctgtaagaataaaatggcttgccaaagaattggggttagagaaaattattctgaaa
caaaaaagaatgcttggctattttgtttcgaatcaacaaagtgatttttaccaaactgaa
gctttttctcgcatgttaaaatacgtgcaacaaaacccaaaaagttgtgtgatgaaagag
aaagaaactaaaaacggtttgcgattactaattacatttataagaatagattctgtaaaa
acagggttgagtattttacagaaaatataa
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