Polaribacter haliotis: H9I45_14925
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Entry
H9I45_14925 CDS
T06834
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
phal
Polaribacter haliotis
Pathway
phal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H9I45_14925 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phal03021
]
H9I45_14925 (rpoC)
03400 DNA repair and recombination proteins [BR:
phal03400
]
H9I45_14925 (rpoC)
Enzymes [BR:
phal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H9I45_14925 (rpoC)
Transcription machinery [BR:
phal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H9I45_14925 (rpoC)
DNA repair and recombination proteins [BR:
phal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H9I45_14925 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QOD60613
UniProt:
A0A7L8AF14
LinkDB
All DBs
Position
3486161..3490435
Genome browser
AA seq
1424 aa
AA seq
DB search
MARKQEKYTVKKFNKISIGLSSPEAILEASRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKM
GYLLGLPSKKLDMIIYYERYVVIQPGIAKGPEGEPLQKMDFLTEEEYLDIVDELPQENQY
KDDADPDKFIAKMGAECLIDLLARIDLDALSFELRHKANTETSKQRKTEALKRLNVVEAF
RDSQKNRENNPEWMIMKAVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLV
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKLSECGIPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDR
KEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQILMLASHNILNPANGAPVTVPSQDMVLGLYYMTKERISTPEV
PIKGEGLTFYSPEEVTIAFNEEMVDLNAGIKVRTYDVDENGEQVRKIIKTTVGRVLFNEK
VPPAAGYINEVLTKKNLRGIIGGILKATDIPTTGEFLDQIKNMGYKFAFQGGLSFSLGDI
IIPDEKQSMIDEANKEVDIIVGNYNMGMLTQKERYNQVIDVWGSTNNRLTELSMKNLRED
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINEEDCGTLRGLEVAPLKKND
EIVESLSDRIEGRISLNNVYHPLTDELLLEANQAITSQLADAVDKSGIDSVEVRSPLSCE
SSRGICAKCYGQSLSTRNKVQIGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGNISEDNK
LVAKFDGNVTIEDLRTVIGKDNDGNDVDIVISRTAEIKIVDKKTGITQSTNILPYGSIIF
DKDRKTIKKGDAIVQWDPFNGVIVSEFGGKVKFDNLEQGINYSVEIDEQTGFQEKVMIDS
KNKKIIASLIIEDKDGNALRSYSLPVGAHLMVSDGDKVESGHTLVKIPRKSGKAGDITGG
LPRVTELFEARNPSNPSVVSEIDGVVSFGKIKRGNREIIVESKTEDVRKYLVKLSNQILV
QENDFIKAGMPLSDGATTPSDILRIKGPSAVQEYLVNEIQEVYRLQGVKINDKHFEVVVR
QMMRKVRIIDSGDTLFLENQLIHKIDFIKDNDAIYGMKVVESAGDSENLKEGQIISARQL
RDENSLLRRNDKNLVEARDAKPATAEQVLQGITRASLQTKSFISAASFQETTKVLNEAAV
SGKVDTLEGLKENVIVGKKIPAGTGMRSYDKIIVGPKDEIEQSF
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaaacaagagaagtacactgtaaaaaagtttaataaaatctcgattggttta
tcatctccagaagcaatattagaagcttctagaggagaggtgttaaaaccagaaactata
aattatcgtacacacaaaccagaaagagatggtttattttgtgagcgtatctttggtcct
gtaaaggattacgaatgtgcttgtggaaaatacaaaagaattcgttataaaggaattgtt
tgtgatagatgtggggtagaagtaacagaaaagaaagtacgtagagatagagtaggacac
attaatttggtggttcctgtagctcatatttggtactttagatcattacctaacaaaatg
ggataccttttaggtttgccatctaaaaagttagatatgataatttactacgaacgttac
gtagtaattcaaccaggtattgcaaaaggacctgaaggggaaccattacaaaaaatggac
ttcttaacagaagaagaatatttagatattgttgatgagttgccacaagaaaatcaatat
aaagatgatgcagacccagataagtttatcgctaaaatgggtgcagaatgtttaattgat
ttattagcacgtatcgatttagatgctttgtcttttgaattaagacacaaagcaaataca
gaaacgtctaaacaacgtaaaacagaagcattaaaacgtttaaatgttgttgaagcattc
agagactctcagaaaaatagagaaaacaatcctgagtggatgattatgaaggcagtacca
gtaattccaccagaattacgtccattagtgcctttagatggtggtcgtttcgcaacttca
gatttaaatgatttatatagaagagttattatcagaaacaatcgtttaaaaagattagtt
gagataaaagctcctgaagttattttacgtaacgagaaacgtatgttacaagaatctgta
gattcattatttgataacacacgtaaatcatctgcagtaaaaacagaatctaacagacct
ttaaaatctttatcagattctttaaaaggtaaacaaggacgtttccgtcagaacttatta
ggaaaacgtgtagattattcagcacgttctgtaattgttgttggaccagaattaaaatta
tcagaatgtggtatcccaaaagatatggcagctgaactttacaagccttttgtaattaga
aagctaattgaaagaggaattgtaaaaacagtaaaatctgctaagaaaattatagataga
aaagaaccagttgtttgggatattttagaaaatgtaattaaaggacatccagttttatta
aacagggctcctactttacacagactaggtatacaagcattccaaccaaaattaattgaa
ggaaaagcaatccaattgcacccgttagtttgtacggcctttaatgccgattttgatgga
gatcaaatggcggttcatttaccattaggaccagaagctattttagaagcgcaaatatta
atgttggcttctcataatatcttaaaccctgcaaatggtgcaccagtaactgtaccttct
caggatatggtattgggtttatactatatgacaaaagaaagaatttctactccagaagta
ccaattaaaggagaaggattaactttctattcaccagaagaagtaacgattgcttttaac
gaagaaatggtagacttaaatgctggtattaaagtaagaacttatgatgttgatgaaaat
ggagaacaagttagaaaaattataaaaactactgttggtagagttttatttaatgaaaaa
gttcctcctgctgcaggatacattaatgaagtattgactaagaaaaacttacgtggaatt
attggtggaattttaaaagctactgatattcctacaacaggagaattcttagatcaaata
aaaaatatgggatataaatttgcctttcaaggtggtttatctttctcattaggggatatt
attattcctgatgaaaagcaatctatgattgatgaagctaataaagaagtggacatcatt
gtaggaaattataatatgggtatgttaacgcaaaaagagcgttacaatcaggtaattgat
gtttggggatctaccaacaatagattaactgaattatctatgaagaatttacgtgaagac
cagcaaggttttaactcggtttacatgatgctagattctggagcaaggggttctaaagaa
cagattcgtcagttaacaggtatgcgtggattaatggcaaaacctaaaaaatctacagct
ggaggtggagaaattattgagaatccaattctttctaactttaaggaagggttatctatt
ctagaatattttatctcgactcacggtgcacgtaaaggattggcagatacagctttaaaa
acggcagatgctggttacctaactcgtagattggtagatgtttctcaagatgttatcatt
aatgaagaagattgtggtacattaagaggtttagaagtagctcctttaaagaaaaatgat
gagattgtagaatctttatctgacagaattgaaggaagaatttctttaaacaatgtttat
catcctttaacagatgagctactattagaagcaaatcaagcaattacttctcaattagca
gatgcagttgataagtctggaattgatagtgtagaagtaagatctccattgtcatgtgag
tcttcaagaggtatttgtgcaaaatgttacggacagagtttatctacccgtaataaagta
caaattggtgaagcagttggtgtaattgcagcacaatctattggagagccaggtacacag
ttaacattacgtacattccacgttggtggggttgcaggtaatatttctgaagataacaag
cttgttgcaaagttcgatggtaatgtaacaatagaagatttaagaacagtaataggtaaa
gataatgatggaaacgatgttgatattgttatctctagaactgctgaaattaaaattgta
gataagaaaacaggaattacacagagtacaaatattttaccttatggttctatcattttt
gataaagatagaaaaaccattaaaaagggagatgcaattgtacaatgggatccatttaat
ggtgtaattgtttccgaatttggtggaaaagtgaagtttgacaatttagagcaaggtatt
aactactctgtagaaattgatgagcaaacaggtttccaagaaaaagtaatgattgattct
aagaacaagaaaatcattgcatctttaattattgaagataaagatggtaatgctttacgt
tcttatagtttaccagtaggagcacatttaatggtaagtgatggagataaagtagagtct
ggtcatactttagttaaaataccaagaaaatctggtaaagcaggagatattacaggaggt
ttaccacgtgtaacagaattatttgaagcgcgtaacccttctaatccatctgtagtttca
gagattgatggtgttgtttctttcgggaaaattaaaagaggtaatagagaaattattgtt
gaatctaaaactgaagatgttagaaagtatttagtaaaactttcgaatcagattttagtt
caagaaaatgactttattaaagctggtatgccattatcagacggagcaacaactccttca
gatattttaagaatcaaaggaccatctgcagtacaagaatatttagtaaacgaaattcaa
gaagtatatcgtttacaaggtgtaaaaattaacgacaaacatttcgaagttgttgttcgt
caaatgatgcgtaaagttagaattatcgattctggagatacattattcttagagaatcaa
ttaattcataaaattgactttatcaaagataacgacgcaatttatggaatgaaagtagtt
gaaagtgctggagattctgagaacttaaaagaaggacaaattatttctgcgcgtcaatta
agagacgaaaattctttattaagaagaaatgataagaatttagttgaagcaagagatgca
aaaccagcaactgcagaacaagttttacaaggtattacaagagcatctttacaaacgaag
tcgtttatttctgcagcttctttccaagaaactacaaaagtattaaatgaagccgctgta
agtggaaaagtagatactttagaaggtttgaaggaaaatgtaattgtaggtaagaaaata
ccagcaggaacaggaatgagatcttacgataaaataatcgtaggtcctaaagatgaaata
gaacaaagtttctaa
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