Parasphingorhabdus halotolerans: HF685_01510
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Entry
HF685_01510 CDS
T07423
Name
(GenBank) S-layer family protein
Organism
phao
Parasphingorhabdus halotolerans
Brite
Glycosaminoglycan binding proteins [BR:
phao00536
]
Heparan sulfate / Heparin
Microbial pathogens
HF685_01510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5649
Motif
Other DBs
NCBI-ProteinID:
QJB68143
UniProt:
A0A6H2DJH9
LinkDB
All DBs
Position
complement(306335..312133)
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AA seq
1932 aa
AA seq
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MTLNATAGDVDGNGAVTVGGGIDLDATGAVGFGSLNAQGGSFTVDAGGNLAATDMAASTT
IAINTGGDVSITGSADAGAGITSTSAGTQTVANMNVTGGDILLDATGAINVDHAEASGNF
QATTLSDFATGLNSIITGGNIIINTGNIADLGNSTAGGLINVTASQIDFVTLLANQSISL
TTQITPNTTSGNGNITGTDMTATTGAITATANAGSTTISGIANAATSMTVASSGNSLVNR
AISGGATSITGASVTLNNGAIGGNLRLNATAGNSNGNGIVTVGGGIDIDATGNASFGSAT
AGNNFTVDAGGAISFVAANTTENSITMAAGGAINGGSLMTADRVTNTGGADNISLTAGGA
LTLTGTANAQDNVTLVGASVNAATLDTGGAIAVTATNAATVGTANSGSGTNITGRSVTLN
NANVSMGAPGGLLRLNATGGDVNGTGTITSGGGIDIDATGNASFGSATAGNNFTVNTGGA
INFANANTTENSITMAAGGAINGGSLMTADRVTNTGGADNINLTAGGALTLTGTANAQDN
VTLVGASVNAATLDTGGAIAVTATNAATVGTANSGSGTNITGRSVTLNNANVSMGAPGGL
LRLNATGGDVNGTGTITSGGGIDIDATGNASFGRATAGNNFTVDAGGEISFVAANTTENS
ITMAAGGAINGGSLMTADRVTNTGGADNINLTAGGALTLTGTANAQDNVTLVGASVNAAT
LDTGGAIAVTATNAATVGTANSGSGTNITGRSVALNNANVSMGAPGGLLRLNATGGDVNG
TGTITSGGGIDIDATGNASFGRATAGNNFTVDAGGEISFVAANTTENSITMAAGGAINGG
SLMTADRVTNTGGADNISLTAGGALTLTGTANAQDNLTLTGATVNAATLDAGGTISVTAN
NAAIVGTAASGGNTTITGASVTLNNANVSAGAAGGLLRLNATGGNVSNSGALVSGGGIDI
DATGNVGIGSLDAQGGSFTVDAGNNISFADATSTSNIDMTAGGSINGGDLNATNALNLNG
NNIAISDASASAINFTSATNILFDMLNSSNAIALAATNGTIGTNMAGGSIVSDGNVDLAA
QIIAVGDITSGGSITGIASNGGASFGAVNAANNITIRAAGTPTLANAISGGNTSITGQSV
TLNNGTIAGNLALNATAGNVDASGNITVGGAIDLDATSDVGFGSLDAQGGAFTTNAGGNI
TFTSAAGSADMIFVAGGGISGTVATSDGNMSLTSAQMINAGSLTSDGTLTARANGGSFTA
GDIISSGDMIISAEGNITLQTANATGLGLIMLSARNGGNLTANLLRSDGNNVLAFASGQL
AVTTIETPQNIFATGVGGLMINSATGNSGEFTSNTGDVVIQNLNFSNEVTADGQNIFLRS
NGALTITANARGGDIDILVEDDLNVQSAIATGDIDLTTTGGSAFVNVVTSQNASLPIVPA
FGSGGITSQAITTSGGNVTITSANNTTIFDSVTAANNLVMTAGGLIDIRASVVGATIQTS
SADMEISSAGQLGDFQTTSDITINSNGTNQVILGGTGATGVFSLSNDEFTRIQSGGDLTF
FATATGNTTPDLIIQDLTAVAGQNVSGPQTANIGFAGTLTIDSEQSTRVDGNLNLTGASA
NTSLNMTAGNDLRINAQGGLIQITDLSGSFGSVGRLDLAATNILALTDQAFTDIAGLNVF
DVDLRLADNDGVNIDGGLIRSGSARFTAPGNIYIQNTSPDQDFDGRRGFTIGSLVIENSG
STDQNIVINGIVNGVTGIDAIFETDVTGNFDPNSTINGCIIADPASCAPPPPPPPTPTPT
PTPTPTPTPTPTPVPTPTPTPTPTPTPVPTPTPVPTPTPSPDPDPTNDNPVQDIIDEELT
PPEEALRSDPFETNLIELRDTEENIDDPLIDEPVTGAGNDDLWAIDQICENPQDEDCRTD
EPADNAELEPAE
NT seq
5799 nt
NT seq
+upstream
nt +downstream
nt
ttgacgctcaatgcgactgcaggcgatgtggatggcaatggggcggtcactgttggcggc
gggattgacctggatgcaaccggcgctgtcggatttggcagtctgaacgcgcagggcggt
tccttcactgttgatgccggtggcaatcttgcagccacagatatggctgcttcgaccaca
atcgcgatcaacacaggcggcgatgtcagcattacaggcagcgcggatgccggggccggc
atcaccagcaccagtgccggaacccagacggttgccaacatgaatgtaacgggcggtgat
atcctgcttgatgcaacaggcgcgatcaatgtggatcacgccgaggccagtggcaatttc
caggcgaccacgctttccgatttcgccaccgggctcaattctattattaccggcggcaat
attatcatcaatacaggtaatattgctgatctgggtaactccaccgctgggggattgatt
aacgtcaccgccagccaaatcgactttgtcactttgctggcaaaccaatcgatttctctt
actacccagatcacgcccaacacgactagcggtaacggcaatattaccggcacggacatg
accgccacaaccggtgcgattactgcgacggccaatgccggatcgacgacgatttctggc
attgccaatgcggcgacctcgatgacggtcgcatcatcgggaaattctctcgtcaatcgc
gcgattagcggcggcgcaacatctattaccggcgcgtcggtcaccttgaacaacggtgca
atcggcggcaatctccgactgaatgccaccgctggcaacagcaatggtaatggcatcgtc
acggtaggcggtggcattgatatcgacgccaccggcaacgcgagctttggcagcgcaacc
gctggtaacaactttaccgttgatgcaggtggcgcgatcagctttgtcgccgccaacacc
accgaaaacagcattacaatggcggcaggcggggcgatcaatggcggatctctgatgacc
gcagaccgggtcaccaacaccggcggagccgataatatcagtctgaccgcaggcggagcg
ctcacattgactggcaccgccaatgcgcaggataatgtgacactcgtcggcgcgagtgtg
aatgcagcgacattggatacaggtggcgccattgccgttaccgcaaccaacgccgcaacg
gtcggcaccgccaattcgggtagcggaacaaacataaccggacgttcggtgacgctcaac
aatgcgaatgtaagtatgggtgctccgggcggcttgctccggctcaatgccaccggtggc
gatgtcaacggcacgggcacgattacttctggcggtggcatcgatatcgacgccaccggc
aacgccagctttggcagtgcaacggcgggcaacaacttcactgttaatacgggcggcgcg
atcaactttgccaatgccaacaccactgagaacagcattacaatggcggcaggcggggcg
atcaatggcggatctctgatgaccgcagaccgggtcaccaacaccggcggagccgataat
atcaatctgaccgcaggcggagcgctcacattgactggcaccgccaatgcgcaggataat
gtgacactcgtcggcgcgagcgtgaacgcagcgacattggatacaggtggcgccattgcc
gttaccgcaaccaacgccgcaacggtcggcaccgccaattcgggtagcggaacaaacata
accggacgttcggtgacgctcaacaatgcgaatgtaagtatgggtgctccgggcggcttg
ctccggctcaatgccaccggtggcgatgtcaacggcacgggcacgattacttctggcggt
ggcattgatatcgacgccactggcaacgcgagctttggccgtgcaaccgctggcaacaac
tttaccgttgatgcaggtggcgagatcagctttgtcgccgccaacaccaccgaaaacagc
attacaatggcggcaggcggggcgattaatggcggatcattgatgaccgcagaccgggtc
accaacaccggcggagcggataatatcaatctgaccgcaggcggagcgctcacattgact
ggcaccgccaatgcgcaggataatgtgacactcgtcggcgcgagcgtgaacgcagcgaca
ttggatacaggtggcgccattgccgttaccgcaaccaacgccgcaacggtcggcaccgcc
aattcgggtagcggaacaaacataaccggacgttcggtggcgctcaacaatgcgaatgta
agtatgggtgctccgggcggcttgctccggctcaatgccaccggtggcgatgtcaacggc
acgggcacgattacttctggcggtggcattgatatcgacgccactggcaacgcgagcttt
ggccgtgcaaccgctggcaacaactttaccgttgatgcaggtggcgagatcagctttgtc
gccgccaacaccaccgaaaacagcattacaatggcggcaggcggggcgattaatggcgga
tcattgatgaccgcagaccgggtcaccaacaccggcggagcggataatatcagtctgacc
gcaggcggagcgctcacattgactggcaccgccaatgcgcaagataatctgacgctaacg
ggtgccactgtgaatgcggcaacactcgatgcgggcgggaccatctctgtcactgccaat
aacgcagcaatcgttggcaccgcagcctctggaggcaatacaaccatcaccggcgcgtcg
gtgacactgaacaatgcaaatgtgagcgctggcgcagcgggtggcttgttaaggctcaac
gccactggcggcaatgttagcaactccggcgcgctggtctctggcggcggcattgatatc
gacgccaccggcaatgtcggcattggttcgcttgatgcacagggcggatctttcaccgta
gatgccggaaataacatcagctttgccgatgccaccagcaccagcaatatcgacatgacc
gctggcggcagcataaacggcggcgaccttaacgccaccaatgcgctcaacctcaatggc
aataatatcgcgattagtgatgccagcgcgagcgcgatcaacttcaccagcgcaactaac
atcctgtttgatatgctaaactcgtcaaacgccattgcgctggctgccaccaatggcacg
attggcacgaacatggcgggtggtagtattgtcagcgatggcaacgtcgatctggccgcc
caaataatagcggttggcgatattacatcaggcggttcaataaccggcatcgcatccaac
ggaggcgctagctttggcgccgtgaacgcggctaacaacatcactattagagctgccggt
acaccgacactggccaatgccatcagcggcggcaacaccagcattaccggccaatctgtc
acgctcaacaatggcacaattgctggcaatctcgcgctcaacgccactgcgggtaatgtc
gacgcaagcggcaacatcacggtcggcggcgcaattgatctagacgccaccagcgatgtc
gggttcggcagtctcgatgcacaaggcggtgccttcaccactaacgccgggggcaatatt
accttcacctctgctgcaggttcagcggatatgatatttgttgctggcggcgggatttct
ggcacagttgcaacgtcagatggcaatatgtcattgacgagcgcacagatgatcaatgcc
gggtcactcacttctgacgggaccttgacggcccgggctaacggcggctccttcactgca
ggtgatatcatctccagcggggacatgatcatttcagcagaaggcaatataactttgcag
actgccaatgcgaccggtcttggtctaatcatgctctccgctcgcaacggcgggaacctc
actgcaaatttattgcgatctgacggcaataatgttctggcttttgcctctggtcagctt
gcggtgacaacaattgaaactccgcagaatatatttgcaactggtgtaggcgggctgatg
attaacagcgccaccggtaattctggtgaattcacttccaacactggtgacgtcgttatc
caaaatctcaatttcagtaacgaggtgaccgcagatggtcagaatattttccttcggtct
aatggagcgctgacgatcaccgccaatgcgcgcggcggcgatattgatattcttgttgag
gacgatctcaatgtccaaagcgcgatcgcgacaggcgatattgatttgacgacgactgga
ggatctgcatttgtcaacgtggtaacatcacaaaatgccagcctgccaatagtaccagca
tttggctcaggaggaataacgagtcaggcgattacaacttccggtggcaatgtgacgata
acgtcggcaaataacacgactatctttgactcagtaacggctgccaacaatctggtaatg
acggcaggcgggctgatcgacattcgggcgagcgtggtcggtgctaccatccagacttcc
agcgcggacatggaaattagcagcgccggtcaactcggcgacttccaaacgacgagcgat
ataaccatcaacagcaatggcactaatcaagtcatattgggcggcaccggtgcgaccggc
gtcttcagtctcagcaatgacgagttcacgcgcattcaatctggtggagacctgacattc
ttcgccactgcgactggcaacaccacacctgatttgatcattcaggatctcacagctgtc
gccggtcaaaatgtctcaggccctcaaacagccaatatcggatttgccggaacgcttact
attgattcagaacaatcaacacgcgttgatggcaatctcaatctgaccggcgcttccgcg
aatacctcgttgaatatgacagcaggcaatgatttgcggattaacgctcaaggcggcctt
atccagattaccgatttgagcggaagctttggcagtgttggtcgattggaccttgcggcg
accaatattttagccttaaccgatcaagcctttacagacattgccggattgaacgttttc
gatgtagacctgcgtctggctgacaatgatggcgtcaatattgacggcggcctaatccgg
agcggttcggcgcggttcactgcaccgggaaatatctacattcaaaacacctctcccgat
caggattttgatgggcgccgaggctttacgataggttcacttgtcatcgagaactcaggt
tccacggatcagaatattgtcattaatggtatcgtcaatggcgtaaccggcattgatgca
atttttgaaaccgatgtgactggtaattttgatcctaattcaaccattaacggctgcatc
attgctgatccagccagctgtgcacctccgcctcctccaccgccaacccccacacctact
ccaactccaactccaactccaactcctacacccactccggtgccaaccccaactccaact
ccaactcctacacccactccggtgccaactccaacgccggtgccaacgccgacaccttca
ccagatccggacccaaccaacgacaatccggtgcaggacatcatcgatgaggaactgacc
ccgccggaagaagcattaaggtcagatccgtttgaaactaatctgatcgagttgcgcgat
acagaagagaatattgacgatccgttgattgacgagcctgttactggcgcaggcaatgat
gacttgtgggccattgatcagatatgtgaaaatcctcaggatgaggactgccgtactgat
gaacctgccgacaatgcagagctagaaccggctgaataa
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