Parasphingorhabdus halotolerans: HF685_09860
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Entry
HF685_09860 CDS
T07423
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
phao
Parasphingorhabdus halotolerans
Pathway
phao03030
DNA replication
phao03410
Base excision repair
phao03420
Nucleotide excision repair
phao03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HF685_09860 (polA)
03410 Base excision repair
HF685_09860 (polA)
03420 Nucleotide excision repair
HF685_09860 (polA)
03440 Homologous recombination
HF685_09860 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phao03032
]
HF685_09860 (polA)
03400 DNA repair and recombination proteins [BR:
phao03400
]
HF685_09860 (polA)
Enzymes [BR:
phao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HF685_09860 (polA)
DNA replication proteins [BR:
phao03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HF685_09860 (polA)
DNA repair and recombination proteins [BR:
phao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
HF685_09860 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HF685_09860 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
HHH_5
DprA_N
HHH_2
DUF7432
HHH
Motif
Other DBs
NCBI-ProteinID:
QJB69546
UniProt:
A0A6H2DPF3
LinkDB
All DBs
Position
complement(2001936..2004752)
Genome browser
AA seq
938 aa
AA seq
DB search
MTDSAEAKPNHLYLVDGSAYIFRAYHRLPPLTNIHGEPVGAVYGYTTMLWKLADELNKAD
GPTHMAVVLDKSGTSFRNDLYDQYKANRPEAPEDLKPQFPMIRDATRAFSLPLIEEENVE
ADDMIASYTKAAVEAGWKVTIVSSDKDLMQLIEPSDDSAVDMLDTMKNARMNRNTVEEKF
GVGPEKLGDVLGLMGDSSDNIPGVPGIGPKTASKLINEFGDIEAVLAAAPEMKKSKMRDN
LVEFAEQARLSRVLVTLREDCPLPDTLESFLIQDIPDMPLRAFLEHHGFNSLLKKLGGNG
MAEPQDPGADKGEAGGTVIGDAPKPSEAPAIDRSQYECVQDMDALDKWIERATEKGVVAV
DTETDSLESVTARVVGVCLATAPNEACYIPLGHGSGDMFGETPKQLDTAAALAKLKPLLE
DDAVLKIGQNLKYDMTVLAQHDVKITPFDDTLVMSFNLDAGLHGHGMDELSKLHLGHECI
SFKSLTGTGKKAITFAEVPLDKATEYAAEDADVTLRLWEILRLRLVPEKATRVYQMVDRP
LVPVIAKMEETGVLVDREELARLSKTFAVEMEKLEKQIHELAGEPFSIGSPKQLGEILFG
KLGLKGGKKGKSGQYSTDVTVLERLAGDGEPIAQKVVDWRQLSKLKSTYTDALQEQINAK
TGRVHTSYSLSGAQTGRLSSTEPNLQNIPIRTEIGRQIRQAFVAAPGNVILAADYSQIEL
RLAAHIADVETLKEAFAAGEDIHNRTARELFGAEDRDARARAKTINFAILYGISRWGLAK
RLEVDPDEAQDMIDTYFERFPGINQYISTTLQSVRETGYTETLFGRKTWFERIKSSNQAE
RQGSERAAINAPIQGTSADIIKRAMARMLPALSEAGLGDVKMLMQVHDELVFELPEGDVD
AASEVIRSVMSGAAEPAVKLSVPLDVDIGTGKSWDEAH
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atgaccgactctgcagaagcaaaaccaaatcacctctatcttgttgatggatcagcctat
attttccgcgcctatcaccgcctgccgccgctcaccaatattcacggcgaaccggtgggt
gcggtttatgggtataccacgatgctttggaaactcgcggatgaactcaacaaggcagat
ggcccgacccacatggcggtggtgctggataaatccggcaccagtttccgcaatgatctc
tatgatcaatataaagccaaccgccccgaagcgcccgaagacctgaaaccgcaattcccg
atgatccgcgatgccacgcgcgcgttctctttgccgctgatcgaggaggaaaatgttgag
gcggatgacatgatcgcatcttacaccaaggcagcggtggaggcaggctggaaagtcacc
atagtgtcgtccgacaaggatttgatgcagctgatagagccaagcgacgacagcgcggtt
gatatgctcgacaccatgaaaaacgcgcggatgaaccgcaatacagtggaggagaaattc
ggcgttggtccggagaaactcggcgatgtgctcggtttgatgggcgatagttccgataat
attcccggcgttccgggcattggccccaagactgcatcgaagttgatcaacgaatttggc
gatatcgaagctgtcctggctgctgcgcccgagatgaaaaaatcaaagatgcgggacaat
cttgtcgagtttgccgagcaggcgcggctgtcgcgggtgctggtgacgctgcgggaggat
tgcccgttgcccgacacgctggagagctttttgatccaggatattcccgatatgccgctg
cgagcgtttctggagcatcacgggtttaactcattgctcaagaagctcggtggcaacggg
atggcagaaccacaggacccgggcgctgacaagggagaggccggtgggacggttattggc
gatgcgcccaagcccagcgaagcgccggccattgatcgtagccaatatgaatgcgtgcag
gacatggacgcgctggacaaatggatagagcgcgcgaccgaaaaaggggtggtcgcggtc
gataccgaaaccgacagtctggaaagtgtgactgcgcgggttgtcggggtttgtctggcc
accgcgcccaatgaagcctgctacatcccgcttgggcatggcagcggcgatatgtttggc
gagacgccgaagcaattggacacagccgcggcattggcaaaattgaaaccgttgctggag
gacgatgcagttctcaaaatcggtcagaatctcaaatatgatatgacggtgcttgcccag
catgatgtgaaaatcacaccgtttgatgatacgctggtgatgagcttcaatctggatgcg
gggcttcatggccacggcatggatgaactctcgaagctgcatctcggccatgagtgcatc
agtttcaaatccctgaccggcacggggaaaaaagcgattacatttgccgaagtgccattg
gacaaagcgacagaatatgccgccgaagatgctgatgtcacgttgcgtctatgggaaatt
ctccgtctgcggttggtgcctgaaaaggcgacgcgggtttaccagatggtggatcgtccg
ctggtcccggtcatcgcgaagatggaagaaaccggcgtgctggtcgaccgcgaagaactg
gcgcgcttgtccaaaacttttgccgtagaaatggagaagctcgagaagcaaatccatgag
cttgccggtgaaccgttttccatcggttctcccaagcaactaggggaaatcctgttcggc
aaacttggtctcaagggcggcaagaaaggcaagagcgggcaatattctactgacgtgacg
gtgctggagcggctggcgggcgacggcgagcccattgctcagaaagttgtggactggcga
caattgtcgaagctcaaatccacctataccgatgcgctgcaggagcagattaacgcgaaa
accggtcgggttcacacgagctattcgctcagcggcgcgcaaaccgggcggctgtcatcg
accgaaccgaacctgcaaaacatcccgatccgcaccgagattggccgccagatccggcag
gcctttgtcgccgcgccaggcaatgtgattctcgcggctgactattctcagatcgagctg
cggttagccgcgcatatcgcggatgtggaaacgctcaaggaagcctttgcggcaggcgag
gatattcataaccgcaccgcccgcgagctatttggcgccgaagaccgcgacgcccgcgcc
cgcgccaagacgatcaacttcgcgatcctctacggcatttcgcgctggggtctggccaaa
cgtctcgaggttgatccggatgaggcgcaggatatgatcgacacctatttcgagcgcttc
cccggcatcaaccaatatatctcgaccaccctgcaatcggtccgcgagactggttacacc
gagacgctgtttggccgcaaaacttggttcgaacggatcaagtcgagcaaccaggccgag
cgccagggcagcgaacgcgccgcgatcaacgcgcccattcaaggcaccagcgccgacatc
ataaaacgcgcgatggcccggatgttacctgcgctgtcagaggccggactgggcgatgtc
aaaatgctgatgcaggtgcatgatgaactcgtgtttgagctgcccgaaggcgatgtcgat
gcggccagcgaagttatccgcagcgtgatgtccggcgcggccgaaccggcggtgaaacta
tcggtgccgctggatgtcgatatcgggacggggaagagttgggatgaggcgcattga
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