Parasphingorhabdus halotolerans: HF685_14440
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Entry
HF685_14440 CDS
T07423
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
phao
Parasphingorhabdus halotolerans
Pathway
phao03410
Base excision repair
phao03430
Mismatch repair
phao03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HF685_14440 (recJ)
03430 Mismatch repair
HF685_14440 (recJ)
03440 Homologous recombination
HF685_14440 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phao03400
]
HF685_14440 (recJ)
DNA repair and recombination proteins [BR:
phao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HF685_14440 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HF685_14440 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HF685_14440 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
QJB70322
UniProt:
A0A6H2DNS9
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All DBs
Position
complement(2944667..2946433)
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AA seq
588 aa
AA seq
DB search
MNAVLNVTQSLSGHSWQWRSTSADARDPGFQPDDLVTQLLLARGATRETLEINRDPTIRG
FMPDPSVFQDMDKAAERISDAIAKQQKITVFGDYDVDGATSAALLIRLLRDLGLEAGYYI
PDRLMEGYGPSGEALVKLGEQGSELVVTVDCGAMAYDALDMANKAGVEVIVVDHHKCAAE
LPKAMALVNPNRLDESDAGAEHGHLAAVGMAFLLGAAIVRTLRGRGYFENRSEPKLLELL
DIVALGTVADVAQLRGLNRAFVAQGLKVLAGRQNIGLAALIDVSRLKRAPICSDLGFALG
PRINAGGRVGKSDLGVRLLITQDPDEAQDIAAQLSHLNEERRAIEAYVLEEAEAMCAGQQ
NQAVAVISSKGWHPGVIGIVASRIKEKLNRPAIVIAEDEEGIGKGSGRSISGVDLGAAII
AAKDSGLLVAGGGHAMAAGITIETSKIDSFAEFLNERLSETVGKAQSGKALLLDAVLSPK
GVNPLIIEAMDGAGPYGMGWPAPRIATGPVRIIKCDIVGKDHVRMIVSGDDGGSIKTIAF
RAAETDLGQALLSAPRGKKLWIAGRAKIDDWGSRPAAEIHLEDAAWAE
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgtcctcaacgtcacacaatccctctctggccattcatggcaatggcgaagc
accagcgccgacgcgcgcgatcccggtttccaaccggatgatctggttacgcagcttctg
ctggcacgcggcgcgacacgcgagacgctggagatcaatcgcgatccgaccatacgaggt
ttcatgccggacccttccgtgtttcaggatatggataaagcggcagagcgcatatccgat
gccatcgcgaaacaacaaaaaataactgtcttcggcgactatgatgtcgatggtgcaacc
agcgcggcattgctcattcgcctgctccgcgatcttggcctggaagctggctattatatc
cccgaccggctgatggaaggctatggcccttccggtgaagcactggtcaagctgggcgaa
cagggttctgaattggtggtcaccgtggattgtggcgcgatggcctatgatgcgctcgat
atggcaaacaaggcgggcgttgaagtcattgtggtcgaccatcacaaatgtgcagccgag
cttcccaaggcgatggcattggtaaaccccaaccgactggatgagagcgatgcaggtgcc
gagcacggccatttagccgctgttggtatggcatttctcctcggtgccgcaattgtcaga
acattgcgaggacgcggctattttgagaaccgcagcgaacccaaattgctggagcttctt
gatatcgtcgcactggggaccgtggctgacgtcgcacagttacgtggcctgaaccgggcc
tttgtggcgcagggcctgaaggttctggctggtcggcagaacatcggcttggcggcgttg
atcgacgttagccgcctcaaacgcgcgccgatctgctcagacctcggatttgcgcttggt
ccacgcattaacgctggcggccgcgttggcaaatccgatcttggcgtccgccttttgata
acgcaagatccagacgaagcccaggatatcgcagcccagcttagccatcttaacgaggag
cgccgtgccatcgaagcctatgtgctcgaagaagccgaagcaatgtgcgccggacagcaa
aatcaggcggttgcagtgatctcgtcaaaaggctggcaccccggcgtcatcggcattgtc
gcgagccgcatcaaagaaaagctaaatcgccccgcaatcgtcattgcggaagacgaagag
ggtattggcaaaggctccggtcgctccatctccggtgtggacttgggcgcggcaataatc
gccgccaaagatagcggattgttggtggcaggcggcggccatgctatggcggcgggcatc
actatcgaaacatcaaagatcgactcctttgccgagtttctcaacgaacgattatccgaa
accgtcgggaaagcacaaagcgggaaagccttgctgctggatgctgtcctctccccaaaa
ggcgtcaacccgctgattatcgaggcgatggacggcgctggaccctatggcatgggttgg
cctgccccgcgtatcgccaccggaccagtgcggatcatcaaatgcgatatcgtcggcaaa
gaccatgtgcggatgatcgtctcgggcgatgatggcggatccatcaaaaccatcgccttt
cgagcggcagaaaccgatctcggccaagccctgctcagcgcgccaagaggcaaaaagctg
tggatcgccggccgggcaaaaattgacgattggggcagccggcctgccgctgaaatccat
ctcgaagacgcggcgtgggcagaatga
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