Parasphingorhabdus halotolerans: HF685_15900
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Entry
HF685_15900 CDS
T07423
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
phao
Parasphingorhabdus halotolerans
Brite
KEGG Orthology (KO) [BR:
phao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
phao03016
]
HF685_15900 (rnd)
Enzymes [BR:
phao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
HF685_15900 (rnd)
Transfer RNA biogenesis [BR:
phao03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HF685_15900 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QJB70556
UniProt:
A0A6H2DSB7
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Position
complement(3238828..3240015)
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AA seq
395 aa
AA seq
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MHIHPLLTESQDIADICERFSKADFVAVDTEFMRENTYWPILCLIQISDGKEAAAIDPLA
KGLDLQPLLDLLVNNEDVLKIFHAGGQDVEIIHNMTGKTPHPIFDTQIAAMALGPSEQIG
YANLVDSWLGITLDKGARFTDWSRRPLDARQIKYAIGDVTHLAEIFPMMLEKLKETGRGM
WINAEMEKLADPDNYVNDPEIAWRRVKSQGRNLEVLGRLKALASWREQEAQSKDLPRGRI
MRDETLADIAAHPPKDQAKLGQVRGLSNGWKSNDIGERLMETLAGAKPLDRSELPSRNDR
RPKSGKASALVADLLKLLLKIRSAELNVASKLLARADDLDRIVAGERDGVQLLEGWRLDE
FGRDAIDLIEGRVSFTVMDGKLKMTHQPEVENEDD
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgcacattcatcccttactgaccgaaagtcaggacatagccgacatttgcgaacgcttt
agcaaagccgattttgtcgcggttgacacagaattcatgcgggaaaatacctattggccg
atcctctgcctgatccagatttccgacggcaaggaagcggcagcaatcgacccgctggcg
aagggccttgatctccagccgttgcttgatttgctggtcaataatgaagatgttctcaaa
atcttccacgccggcgggcaagacgtcgagatcatccacaatatgaccggcaagacgccg
catccgattttcgatacccaaatcgccgccatggcgctcggccccagcgaacagattggc
tatgccaatctcgtcgatagctggcttggcatcaccctcgataaaggcgcgcgctttact
gactggtcgcggcgaccattggatgcgcgccagataaaatatgcgattggcgatgtcacc
catctggccgagatttttccgatgatgctcgaaaaactcaaagaaaccgggcggggcatg
tggattaatgcggagatggaaaagctcgccgatccggataattatgttaacgatcctgaa
atcgcctggcggcgggtgaaatcacagggccgcaatctggaagtgctcgggcgactcaag
gccctggcatcctggcgcgagcaagaagcgcaatcgaaggatctcccgcgcggccggata
atgcgcgatgaaacactcgcggatatcgctgctcatccccctaaagatcaggcaaaattg
ggtcaggtacgcggactatccaatggctggaagagcaatgatattggcgagcggctaatg
gagacgctggctggcgccaaaccattggaccggagcgaactaccctccagaaatgatcgt
cgccccaaatccggcaaagcaagtgcactggttgcagatttactcaagctgctgctcaaa
atacggtctgcggagctgaatgtggcatcaaaactattggcacgggccgatgaccttgac
cgtatcgtcgctggcgagcgtgatggcgttcagcttctggaaggctggcggctggatgaa
tttggccgcgatgctattgatctcattgaggggcgggtgagtttcaccgttatggacggt
aagctaaaaatgacccaccaaccggaagttgaaaacgaggacgattaa
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