Peptoniphilus harei: NCTC13077_00498
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Entry
NCTC13077_00498 CDS
T05838
Symbol
pbpD
Name
(GenBank) Penicillin-binding protein 4 precursor
KO
K05366
penicillin-binding protein 1A [EC:
2.4.99.28
3.4.16.4
]
Organism
phar
Peptoniphilus harei
Pathway
phar00550
Peptidoglycan biosynthesis
phar01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
phar00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
NCTC13077_00498 (pbpD)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
NCTC13077_00498 (pbpD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
phar01003
]
NCTC13077_00498 (pbpD)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
phar01011
]
NCTC13077_00498 (pbpD)
Enzymes [BR:
phar01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.99 Transferring other glycosyl groups
2.4.99.28 peptidoglycan glycosyltransferase
NCTC13077_00498 (pbpD)
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
NCTC13077_00498 (pbpD)
Glycosyltransferases [BR:
phar01003
]
Polysaccharide
Bacterial polysaccharide (excluding LPS)
NCTC13077_00498 (pbpD)
Peptidoglycan biosynthesis and degradation proteins [BR:
phar01011
]
Peptidoglycan biosynthesis and degradation
Glycosyltransferase/DD-Transpeptidase (Class A PBP)
NCTC13077_00498 (pbpD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transgly
Transpeptidase
SHOCT_2
SHOCT
MC5
Motif
Other DBs
NCBI-ProteinID:
VEJ33768
LinkDB
All DBs
Position
1:complement(514171..516591)
Genome browser
AA seq
806 aa
AA seq
DB search
MKDNRNNKPRGMIKLSSIIKILLLIVVAAIIILGSLVTSIILGIFKKAPVIEPSEYRSQL
SETSRIYSSDGKLIESLISDQFSEFVPYEDIPKDLVNAIVAIEDERFFEHNGVDYKRVVG
AIVHDIKTRSFEQGASTITMQLAKNLYTSFSKSVVRKITDVYYSYQIEQDLSKEQILEAY
LNSAGFSKGTVGVQAAAKTFFNKDVSELDLAECALIAGVTNLPEKYTPYNTQEINESDDL
GNIEIVLLPKNENSEPNSDEIIRIAKNLNELGQIDNFDLIQIQNDMIVPVKAVFNETSQE
RQRLVLKRMLNQGLINQEDYDRALNEKIEINIGSRKESGISSFYTDVVQKNAIKILTKSG
YSQEEATNKLFNGGLKIYTPMDINMQRTLEEVVSNPRYYYGGFTDKNGIIQPQVASVIID
QKTHEVKALVGGRNVSGGRLLNRALVPRQPGSSIKPISVYLTALNNGATAGDVYLDQKMP
ERLFGHSPRNAGNYYQGWTTIRNLLRQSSNVGAYQVARDISADKDAKINRNSTYSKAYND
EESINKMVETLKSIGISTIVEKDDNPTWNDMDYAPLTLGGMSYGISPFEMAGAFTAISNG
GKYANPYVITKIESNTGEVIYQVDPKEKEVTSPQNAYILTDMLKDVVRRGTGRNASFPGQ
EVAGKTGTTNDKKDVWFVGYTPYYTCSVWIGNDKNQKLAFGSTQSAYLWKQIMKSVHQDL
DRKEFEEPEGIYTKYSGGRREIFAEGTKPHYTNKYGFYKSYTKKKKVTKNNDNNNDNKKS
KKSSDNNNNSSRKKKKSSKSIANNED
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgaaagataatagaaacaataaacctcgcggaatgataaaactttcaagcataataaaa
atactactcttaattgttgtggctgcaattataattttaggctcacttgtcacttcaatt
atcttgggtatttttaaaaaagctcctgtaatagaaccatcagaatacagatcacaactc
tctgaaacttctaggatctattcaagcgacggaaagctaattgaatcacttatatctgat
caatttagtgagttcgttccctacgaggacataccaaaggatttggtaaatgccattgtg
gcaatagaagatgaaaggtttttcgaacacaatggagtcgactacaagagagtagttggt
gccatagttcacgatataaagactaggtcttttgaacaaggtgcgtcaactataacaatg
caacttgccaaaaacttatacacttctttctcaaagagtgtagttagaaagataaccgac
gtctactattcttatcagatagagcaagatctttccaaggaacaaattctcgaagcttac
ttaaactctgcaggcttctctaagggtactgttggtgtccaagctgcagccaagactttc
tttaacaaagacgtatcagaacttgaccttgctgagtgtgctcttatagcaggtgtaaca
aaccttccagaaaagtacactccctacaacactcaagagataaatgaatcagacgacttg
ggcaacattgaaattgttcttctaccaaagaacgaaaactcagagccaaactctgatgaa
ataataagaattgccaagaacttaaatgaacttggtcaaatcgataactttgatttaatt
caaattcaaaatgacatgatagttcctgttaaggctgtctttaatgaaacttctcaagaa
agacaaagacttgttctaaagagaatgcttaaccaaggactaattaatcaagaagactac
gacagggccctaaatgaaaaaattgaaatcaacattggctctcgtaaggaaagcggcatc
tcttccttctacacagacgtagttcaaaagaatgccataaaaatcttgacaaaatcaggc
tactcacaagaagaagccacaaacaaactctttaacggaggtcttaagatttatactcca
atggatataaatatgcaaaggactcttgaagaagttgtttctaacccaagatactactat
ggtggctttactgataagaatggaatcatccaaccacaagttgcctctgtcattatcgac
caaaaaactcacgaagttaaggcccttgttggtggtagaaatgttagtggtggtagactt
ttaaatagggcacttgtaccaagacaacctggttcatcaattaaaccaatttcagtttac
cttacagccctaaataacggcgccactgcaggtgatgtttacctagaccaaaagatgcca
gaaagattatttggccactcacctagaaatgctggtaactactaccaaggttggacaact
ataagaaacctacttcgtcaatcatcaaacgttggtgcctaccaagttgcaagagatatt
tctgctgacaaggatgcaaaaatcaacagaaactcaacttactcaaaggcctacaacgac
gaagaatcaataaacaaaatggtggaaactttaaaatcaattggaatatccacaatagtt
gaaaaggacgacaacccaacatggaatgacatggactatgccccacttactcttggcggc
atgagctatggtattagtccctttgaaatggctggcgccttcactgcaatttccaatgga
ggaaagtatgccaacccttatgtaataacaaaaatcgaatcaaacactggtgaagttatc
taccaagttgaccctaaggaaaaggaagttactagtccacaaaatgcctatatcttgaca
gacatgttaaaggatgttgtaagacgtggtactggtagaaatgcttccttccctggtcaa
gaagttgccggcaagactggtacaactaatgacaagaaggacgtttggtttgttggttac
actccttactacacttgctcagtttggattggtaatgacaagaaccaaaaacttgccttt
ggatcaactcaatcagcctacctatggaagcaaattatgaagtcagttcatcaagatctt
gacagaaaagaatttgaagaacccgaaggaatttacactaagtattctggtggtagaaga
gaaatctttgctgagggaactaaaccacactacactaacaagtatggcttctacaagtcc
tatacaaagaagaaaaaagtaactaagaataacgacaacaacaatgacaacaaaaagagc
aagaagtcatcagacaataacaacaattcaagtcgcaagaagaaaaaatcttctaaatca
attgctaataatgaggattaa
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