Peptoniphilus harei: NCTC13077_00542
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Entry
NCTC13077_00542 CDS
T05838
Symbol
yjcD
Name
(GenBank) Putative ATP-dependent DNA helicase yjcD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
phar
Peptoniphilus harei
Pathway
phar03420
Nucleotide excision repair
phar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC13077_00542 (yjcD)
03430 Mismatch repair
NCTC13077_00542 (yjcD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phar03400
]
NCTC13077_00542 (yjcD)
Enzymes [BR:
phar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC13077_00542 (yjcD)
DNA repair and recombination proteins [BR:
phar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC13077_00542 (yjcD)
MMR (mismatch excision repair)
Other MMR factors
NCTC13077_00542 (yjcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_12
AAA_30
Motif
Other DBs
NCBI-ProteinID:
VEJ33811
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All DBs
Position
1:565633..567492
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AA seq
619 aa
AA seq
DB search
MNLTPSQLKAVDHFEGPAMVLAVPGAGKTTMILYRTKKLIERGVDPKSILTITFSKAQAV
DIKNRFVGMNGDKTVHFSTIHAFCYSIVRDYSKKYGKSLSLIDSNMKKKYEILRDIYRSV
NNSYPTEERIETAISEVGYCKNMMLSPKSFAKSKRCDTDNFVKFFETYEKLKKDKNLIDF
DDMINLSYYVLKNDPAIMKKYRDRFKFIQLDEGQDTSRSQFMVLKLLAKPSNNLFVVADD
DQSIYGFRGANTEELFKLKDEFDDIKTFYMEDNFRSTKNIVNIANIFIAQNEKRFEKTLV
TENPFDKPVNIIKVKEPRDQYALIEEELKKDDGDIAVLYRNNLSSIGLVEYFERKNYEFN
IKDKKTKFFSHFITRDILDILNFAQDLSDIDLYEKFYFKLKGYISKRHIEYLKRHRGKNV
FNILKDYPDLPPYYNKNINGLLVGFKKIARVSVYEAIDYIDKEMGYGDYLRENAKRFMET
ESTLNEYLYYLKMIAKSTKSLDLFVGRLKELEYDLLKARDTDARLTFSTIHSAKGLEFSK
VFVVDLYEGTLPSTSSIEDLREDPDLYEEERRLFYVAMTRAKRELFLMYSHYTNGKKNEI
SSFVTDLETLAGGKSEHNR
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
gtgaatttaacaccaagtcaattaaaagctgtagaccactttgagggtcctgccatggtc
ttggcagttcctggagcgggaaagactactatgatactttacaggacaaaaaaattaata
gagaggggagtggacccaaagagcatcttgaccattactttttcaaaagctcaagcagtg
gatataaaaaatcgttttgtaggaatgaatggggacaagactgttcatttctctactatc
catgccttttgctactcaattgtaagagattattccaaaaagtatggcaagtcccttagc
ttaattgattctaatatgaaaaagaagtacgagatcctaagagacatctacaggtctgtt
aataattcttatcccacagaagagcgaatcgagacagcaatttcagaagttggttattgc
aagaatatgatgctgtcgcctaagtctttcgcaaagtccaagaggtgtgacacagataat
tttgtgaaattctttgagacctatgagaagcttaaaaaagacaagaacttaatagacttt
gatgatatgataaatctttcttactatgtcttaaaaaatgacccggcaataatgaagaag
tacagggacaggtttaagtttatccaacttgatgagggacaagacacttctaggagccag
tttatggttttgaagctccttgccaagcctagcaacaatttatttgttgttgccgatgac
gaccagtctatctatggctttaggggagccaatacagaggaactttttaagcttaaagat
gaattcgatgacatcaagactttttatatggaagacaacttccgttccacaaaaaatatc
gtaaatattgcaaatatttttattgcccaaaatgaaaagaggtttgaaaagacccttgtt
acggaaaatccctttgacaaacccgtcaatattattaaggttaaggaaccaagggaccag
tacgcacttattgaagaagagttgaaaaaagatgatggtgacatcgccgtcctttatagg
aataacctatcaagcattggccttgtagaatactttgagaggaaaaattatgaatttaat
ataaaggacaagaagactaagtttttctcccactttataacccgtgacatcttggatatt
ttaaactttgcccaggatttgtcagacatagacctctatgaaaaattttattttaagttg
aagggttatatttcaaaaagacatattgaatacttaaagaggcacagagggaaaaatgta
ttcaacatcctaaaggactatccagaccttcctccttactacaacaaaaatatcaatggc
ctacttgttggttttaaaaagattgcaagagtgagtgtctatgaagccatagattatatt
gacaaggaaatgggctatggtgattatctaagggaaaatgccaagaggtttatggaaaca
gaatccaccttaaatgaatacctctattatttaaagatgattgctaagtcaactaagtcc
ttagacttatttgttggaagactaaaggagttggaatatgacctcttaaaggccagggac
actgatgcaaggcttaccttctccacaatccactcagccaaggggcttgaattctccaaa
gtctttgttgtagacttatatgagggaactctgccctccacttcaagcattgaggaccta
agagaagatccagacctctatgaagaggagagacgcctattttatgtggccatgaccagg
gcaaagagggagctcttcctcatgtattcccactacactaatggaaagaaaaatgaaatt
tcttcctttgtgacagatttagaaactttagcaggaggaaaaagtgaacataatagatga
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