Peptoniphilus harei: NCTC13077_00845
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Entry
NCTC13077_00845 CDS
T05838
Symbol
polC_2
Name
(GenBank) DNA polymerase III polC-type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
phar
Peptoniphilus harei
Pathway
phar03030
DNA replication
phar03430
Mismatch repair
phar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC13077_00845 (polC_2)
03430 Mismatch repair
NCTC13077_00845 (polC_2)
03440 Homologous recombination
NCTC13077_00845 (polC_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phar03032
]
NCTC13077_00845 (polC_2)
03400 DNA repair and recombination proteins [BR:
phar03400
]
NCTC13077_00845 (polC_2)
Enzymes [BR:
phar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCTC13077_00845 (polC_2)
DNA replication proteins [BR:
phar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NCTC13077_00845 (polC_2)
DNA repair and recombination proteins [BR:
phar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NCTC13077_00845 (polC_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
DNA_pol3_finger
PHP
HHH_6
Rv2179c-like
DEDDh_C
RNase_H_2
tRNA_anti-codon
DNApol_Exo
DNA_pol_A_exo1
DNA_pol3_a_NII
Zn_ribbon_8
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
VEJ34105
LinkDB
All DBs
Position
1:886527..890789
Genome browser
AA seq
1420 aa
AA seq
DB search
MGDNLILLKDILQKLNSSYNDVPDDIYIESIRRNKNKGEVYFVINSKNDLEINFKNEISK
IFSTSLEEYKTYIDFKSSSLYKSEDDLIYAEILKYNPSSQIWIKDVLINKNDKIGLINIK
LPSEEAFYSLSQNGFASYLENELKVFGNFSIKFDFDKKDLVEDNIENFISQIEEAEEVIS
TKHEIEVKTKIENKSKEKKIKKSNSYGKKDIGIIEKLVYVNVNSQKVSVEVDIFNLESRE
LKNGNFLISLSITDYTSSTLAKIFLKPDKAEEFLESFGVGDHVVITGNVSYDNFSKCETI
MIRYIEKRDKVLRMDYSDEKRTELRIHSKMSQMSGVTSFTDFANRAKLWGHDAIGITDTN
DVQGFPEAMEAGEKTGLKILYGTDINFVDDKEKIVTNYIDGKTYDTYVVFDIETTGLSSR
NDKITEIGAVKIKDGIITDRFSQLINPEKEIPQVVVNLTGISNSLVENEPTIEEVIPKFY
EFAKDAVLVAHNAKFDISFIRREYANNGLEFNHPILDTLVMARATMTHMKRFNLGTLCKN
LGVSLVGAHRAVNDAEATAEVFIKLIDKIKRDEEDFNFEILNKQIKNTDSKRLFESSLLL
LVKDEVGLKNLYMLISDSHMKYFNFVAKVPRSLLDKYREGILVGSGNANSELFDAIYRMC
PHEELVKIASYYDFLEIQPASDNIMSIEDGKYTQEDIREINKKILELGEELNIPVVADSD
TYYIEESEDLLRKIVLNGKPGRPDPRSSRNQKFYFKTTEEMLDEFSYLGQDKAYEVVVTN
TNKLKDFIKDIKPIPDGTYPPVIEGSDESLRDMTYKKAHDIYGEVLPKIVEDRLEKELKS
IISNGYSVLYIIAQKLVKKSNDDGFLVGSRGSVGSSFVATMADITEVNPLPPHYICPNCK
YSEFTEDLTYGSGVDMPDKVCPKCGTQLIKDGHNIPFEVFLGFYGDKEPDIDLNFAGEYQ
PRAHKYTEELFGEGYVFRAGTIGKIAEKTAYGYVKKYFENQHISPIEIDRLSRAITDGKR
TSGQHPGGVMIVPKTNSIFDFTPIQYPADDPSSGVITTHFDYNFIHGKILKLDILGHDGP
TIIKMLEDFTGIDSSTIRLDDQNTLSIFNSAEAFHMDEYIFSCKTGTLGIPEFGTSFVIS
MLLETKPKNFADLVRISGLSHGTDVWISNAQELVDSGRAELKDVIATREDIMVYLINAGA
ENKMAFDTMEKVRKGKGLTEEQENIMKNLDLPEWYIDSCKKIKYMFPKAHAVAYVMLSFR
IAYYKLNHPLAFYATFFTIKLNDFNGENIIEGPGFLKNRIKILRDIEKPTAKDKGEIRVS
EVALEMYARGFEFLSPDIYKSKASKFTIEDGKIRMPLRAIPGVGENCANKIEEESKKSNY
LSIEDFSKRTKAGNSVITILQKNGILKDLDETNQISLFNF
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
ttgggtgataatttgattttattaaaagatattttacaaaaattaaattcttcttataat
gatgttccagatgacatttatatagagtcaattagaagaaacaaaaataaaggagaagtt
tattttgtaattaattcaaaaaatgatttagaaataaattttaagaatgaaatttctaaa
attttttctacaagcttagaagaatacaagacttatattgactttaaatcatcttctctt
tataaaagtgaagatgatttaatttatgctgaaattttgaagtacaatccttcatcacaa
atatggattaaggatgttctaataaataaaaatgataaaattggtttaataaatataaaa
ctacctagtgaagaagcattttatagcttaagtcaaaatgggtttgcatcatatctggaa
aatgaattaaaagtttttggtaacttcagtataaaatttgattttgataaaaaagatctt
gtagaggataatattgaaaactttatttctcaaatagaagaagctgaagaagttatttct
actaaacatgaaattgaagtaaagacaaaaatagaaaataagtctaaagaaaagaaaatt
aaaaaatctaactcctatggaaaaaaagatataggaataatagaaaagctagtttatgtt
aatgtaaattcacaaaaggtaagtgttgaagtcgatatatttaatttagaaagtagagaa
cttaaaaacggtaactttttgatttccctttctattacagactacacatcatcaactctt
gcaaaaatattcttaaaacctgacaaggcagaagagttcttagaaagcttcggtgtaggt
gaccatgttgttattactggaaatgtgtcctatgataatttctcaaaatgtgaaactatt
atgattaggtacattgaaaaaagagataaggtccttaggatggattattctgatgaaaag
agaacagagttaagaattcattccaaaatgtctcagatgtctggtgttacatcttttact
gactttgcaaatagagctaaactttggggacatgatgcaattggcattactgatactaat
gacgttcaaggtttcccagaagcaatggaggccggagaaaaaactggacttaaaattctt
tatggaacagacataaattttgttgatgataaggaaaaaattgtaactaactatatagat
ggaaaaacttacgatacttacgtagtctttgatatagaaactactggtctttcatctaga
aatgataaaattacagaaattggtgcagtaaaaataaaagacggtattataacagataga
ttttcacaacttattaaccctgaaaaagaaattcctcaagttgttgttaatttaacaggg
attagtaactccttagttgaaaatgaacctacaatagaagaggttattcctaaattttat
gaatttgctaaagatgccgtactagttgcccacaatgcaaaatttgatatttcatttatt
aggagagagtatgctaacaatggcttagaatttaaccatccaatacttgatacacttgta
atggcaagagcaacaatgacacatatgaagagattcaatcttggaactctttgtaaaaat
cttggtgtgtctcttgtgggagcgcatagagcagttaatgatgctgaagctacagcagag
gtttttataaagttaattgacaaaattaaaagagatgaagaagattttaattttgaaatt
ttaaataaacaaataaaaaacacagattctaaacgtttattcgaatcttctttattattg
ttagttaaagatgaagttggtttgaaaaacttatatatgttaatttctgattcgcatatg
aaatactttaattttgttgcaaaagttcctagaagtttattagataaatatcgagaagga
attcttgttggatctggtaatgccaattcagaattgtttgatgctatatataggatgtgt
ccccatgaagaattagttaaaattgcatcttactatgattttctagaaatccaaccagca
agtgacaacattatgtcaattgaagatggaaaatatactcaagaagatattagagaaata
aataaaaaaatcttagagcttggagaagaactaaatattcctgttgttgctgattcagac
acatattatatagaggagtccgaggacctccttagaaaaattgtcctaaacggcaaacct
ggtagacctgatccaagatctagtagaaaccaaaagttttattttaagacaacagaagaa
atgctagatgaattttcctacttaggtcaagacaaagcctatgaagttgttgtaactaat
acaaataaattaaaagattttattaaagatataaaaccaattccagatggaacttatcca
ccagttattgaaggttctgatgaaagtttaagggatatgacttacaaaaaggcccatgac
atttatggagaagttcttcctaagattgttgaagacaggttggagaaggaactaaaatct
attatttcaaatggttattcagttctatatattattgcacaaaaacttgtgaaaaaatca
aatgatgatggattcctagtaggttctagagggtctgttggatcttcttttgttgcaaca
atggccgacataacagaagtaaaccctcttccaccacactacatttgtcctaactgcaaa
tattctgaatttactgaagacttaacttatggatctggggttgacatgccagataaagta
tgccctaaatgtggaacccaactcataaaagatgggcacaatattccgtttgaagttttc
ttaggtttttatggagataaggaaccagatatagatttaaactttgctggtgagtatcaa
cctagagcccataaatacactgaagagttatttggagaagggtatgtatttagggcagga
actataggaaaaattgctgaaaaaactgcttatggttatgtgaaaaaatattttgaaaat
cagcatatctcaccaattgaaattgacagactttcaagggcgatcactgatggtaaaaga
actagtggacagcaccctggcggtgtaatgattgttcctaaaacaaattcaatttttgac
ttcacaccaattcaatatccagcagacgatccaagttcaggagttataacaactcatttt
gattataactttattcatggaaaaatcttgaaattggatatactaggtcacgatggtcca
acaattattaaaatgttagaggacttcactggaatagactctagtacaattaggcttgat
gatcaaaatacactttctatatttaatagtgcggaagcctttcacatggatgaatatatt
ttctcttgcaagactgggacactaggaataccagaatttggaacttcttttgttatatct
atgttactagaaacaaaaccaaaaaactttgcagatcttgtgagaatatctggcctatcc
catggtactgacgtttggatttctaatgcccaagagttagttgattctggtagagctgaa
ttaaaagatgttatcgctacaagggaagacatcatggtatatctaataaatgcaggtgct
gaaaataaaatggcctttgatactatggaaaaagtaagaaagggaaaaggcctaactgaa
gaacaagaaaatataatgaaaaacttagatttgcctgagtggtatattgattcttgtaag
aaaatcaagtacatgttccctaaggctcacgcagttgcttatgtaatgctttctttcaga
attgcttattataagctcaatcatcctttagccttttatgcaactttctttactattaaa
ctaaatgattttaatggagagaatattattgaaggtccaggctttctcaaaaatagaatt
aaaattttaagagatattgaaaaaccaacagctaaggacaagggagagataagagtatct
gaagtagcccttgaaatgtatgcgagaggatttgaatttttaagtcctgatatctataag
tcaaaagcatctaaatttactattgaagatggaaaaattagaatgccacttagggcaata
cctggtgtaggcgaaaactgtgctaacaaaatagaagaagaatcaaaaaaatctaattat
ttatcaatagaagatttttccaaaagaacaaaggctgggaattctgttattacaatttta
caaaaaaatggaatattaaaagaccttgatgaaaccaatcaaatttcattattcaatttt
tga
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