Peptoniphilus harei: NCTC13077_01114
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Entry
NCTC13077_01114 CDS
T05838
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
phar
Peptoniphilus harei
Pathway
phar03030
DNA replication
phar03410
Base excision repair
phar03420
Nucleotide excision repair
phar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC13077_01114 (polA)
03410 Base excision repair
NCTC13077_01114 (polA)
03420 Nucleotide excision repair
NCTC13077_01114 (polA)
03440 Homologous recombination
NCTC13077_01114 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phar03032
]
NCTC13077_01114 (polA)
03400 DNA repair and recombination proteins [BR:
phar03400
]
NCTC13077_01114 (polA)
Enzymes [BR:
phar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCTC13077_01114 (polA)
DNA replication proteins [BR:
phar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC13077_01114 (polA)
DNA repair and recombination proteins [BR:
phar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
NCTC13077_01114 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC13077_01114 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
AvrB_AvrC
HHH_5
UBA_9
TetR_C_10
Motif
Other DBs
NCBI-ProteinID:
VEJ34557
LinkDB
All DBs
Position
1:complement(1158026..1160683)
Genome browser
AA seq
885 aa
AA seq
DB search
MDNKFLIIDGSSLFFRAFYALPLLKTKRGLYTNAIYGFVMMVENAIEKIKPSHVAVCFDM
KGKTFRSDIYKDYKGTRQKTPNELEQQWPLVRDILGHMNIKILESPVYEADDIAGTLAKL
GSEEGFENYLLTGDKDYFQLVNENTKVLFTRKGITDMDIVTVDKIEEDYGIEPLEFIELK
ALMGDSSDNIPGIYGIGEKTGLKLVRQFHTLENLYDNIDDVSGKKLKEKLVDGKTAAFMS
KKLGTIVRDVPIEESLDDLKKLDYDYEKLSELYREFEFNSMLDRLPEEYRKEEVEEISQD
NFEFVEIKDLRDIEKEIKDKKYFAFKFITDGKIYEDVKPIYLAVKVKDLEVKIISYDDID
FDFLKDLMEDEDVEKLGYSLKEDIIILMDLGIDIKNYSHDVEIAEYLLNSTKSDYDINKI
SMEYFKNGYLDLEDLLGKGAKKKTYADLDKEDLFKYFAFALNTIYRLEDIQKEKIEEEEM
TSLYQDMELPLVEVLASMEYVGINTDESVLDEIDEQIIEKLKNLEEEIYGEAGEEFNINS
PKQLGIILFEKMDFPVIKKTKTGYSTSADVLEKLRGKGEIIDKILDYRKFSKLKSTYIDG
LKSVINKKTKRIHSRFMQTVTATGRISSTDPNLQNIPIKTEEGRLIRKAFLASEGGVLVD
ADYSQIELRVLAALSDDKEMLDAFKHGLDIHRKTASEVFHVDYEDVNDLQRSEAKAVNFG
IVYGISDYGLSQNLNIPRKAAKEYIDNYLGHFVGIKDYMSEEIKNGKDKGYVETIFKRRR
YIPELNAKNFNIRSFGERIALNTPIQGSAADIIKIAMVKVYNELKKRNLKSKLIIQIHDE
LVVDTAEDELEEVKELMKDLMENSVDLNVKLSVDMNTGKNLYESK
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atggataacaaatttttaattatagatggaagttcgcttttcttcagggccttttacgcc
ctcccacttcttaaaactaagagaggactttataccaatgccatttacggttttgtcatg
atggtggaaaatgcaattgaaaagatcaagcctagtcatgtggcagtttgctttgacatg
aagggaaagacttttagatcagatatctacaaggactacaagggaactaggcaaaagact
cccaatgagttggaacaacaatggcctcttgtgcgtgacatcttgggacacatgaatata
aaaattcttgagtcgccagtttatgaagctgatgatattgctggaactcttgctaagctt
gggtctgaggaaggtttcgaaaattatcttttgacaggggataaggattattttcaactt
gtaaatgaaaatacaaaagtcctcttcactcgcaagggaatcactgacatggatattgta
actgttgataagatagaggaagattatgggattgagccccttgaatttattgagttaaag
gccctcatgggtgactcatctgataacattccaggaatttatgggattggagaaaagact
ggcttaaaacttgttcgccagttccatactcttgagaatctttatgataatattgatgat
gtttctggcaagaagttaaaggaaaaattagttgatggcaaaactgctgcctttatgagc
aagaagctgggaacaattgtgagggacgttcctattgaagaaagtcttgatgacttaaaa
aaacttgactacgactatgaaaagctttcagaactttaccgtgaatttgagtttaactca
atgttagacaggcttccagaagaatatcgcaaggaagaagtggaggaaatctcccaagac
aattttgaatttgttgaaataaaagacctaagagatattgaaaaagaaattaaggataaa
aaatattttgcctttaaatttattacagatggaaagatttatgaagatgtgaagccgatt
tatcttgcagtcaaggtcaaggacttagaagtcaagataatctcttatgatgatatagac
tttgacttcttgaaggaccttatggaagatgaagatgtagaaaaacttggttattcttta
aaggaagacataattatcttaatggatttgggaattgacataaaaaattattctcatgac
gttgaaattgcagaatatttgttaaattcaactaagtctgactacgatatcaacaaaatt
tccatggaatacttcaagaatggttacttggaccttgaagacctgcttggcaagggtgca
aagaagaagacttatgctgacctagacaaggaagatttatttaagtattttgcctttgcc
ttaaatacaatttacaggttggaagatatccaaaaggaaaaaatagaggaagaagagatg
acttctctctaccaagacatggagctacctcttgttgaggtccttgcatcaatggaatat
gtgggcatcaacactgacgagtctgtgcttgatgaaattgacgagcaaataattgaaaag
ctaaagaacttggaagaagaaatttatggagaagctggggaagaatttaatataaattcg
ccaaaacaattgggaattatcttattcgagaagatggacttccctgttattaagaagaca
aaaactggttactcaacttctgctgatgtcttggaaaaacttcgtggcaagggcgagata
atcgacaagattttggactacaggaagttttccaagcttaagtcaacttatattgacggc
ctaaagtctgttataaacaagaagactaagaggatccactcaagatttatgcagacagtg
actgctacgggtagaatttcttctactgatccaaacctacaaaatattccaataaaaact
gaagagggacgactaataagaaaggccttcttggcatcggaaggtggagtcctagttgac
gccgactattcacaaattgagctaagggtcttagctgctctatcagatgacaaggagatg
cttgatgcttttaagcatggcttagatattcacaggaagactgcttcagaagttttccac
gttgactatgaagatgtaaatgatcttcaaaggtcagaagccaaggcagtaaactttgga
attgtctatggaatttctgattatggactttcacaaaacctaaacatcccaagaaaggct
gccaaggaatatattgacaactatcttggtcactttgtgggaataaaagattatatgtca
gaagaaattaaaaatggcaaggacaagggttatgtggaaaccatctttaagagaaggaga
tacatcccagaactcaatgccaagaacttcaacatcaggagttttggagagagaattgcc
cttaacactcctatccagggttcagctgctgacattataaaaattgccatggtgaaagtt
tacaatgaacttaagaagagaaatttaaaatcaaaattaataattcaaatccatgacgaa
cttgttgttgatactgcagaagatgaacttgaagaagtgaaggaacttatgaaggaccta
atggaaaattctgtggacctaaatgtaaaattgtctgtggatatgaatacagggaaaaat
ctttatgagtcaaaataa
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